Variant report

Variant	rs9381392
Chromosome Location	chr6:45618323-45618324
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45617993..45619581-chr6:45633411..45635573,2	MCF-7	breast:
2	chr6:45616442..45618813-chr6:45757079..45758727,2	K562	blood:
3	chr6:45615231..45620456-chr6:45620774..45624802,6	MCF-7	breast:
4	chr6:45576031..45578499-chr6:45617077..45619180,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10948245	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10948246	0.91[EUR][1000 genomes]
rs10948248	0.84[EUR][1000 genomes]
rs12524499	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1388243	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16873629	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28579170	0.85[EUR][1000 genomes]
rs3925761	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4714863	0.83[EUR][1000 genomes]
rs73735437	0.88[EUR][1000 genomes]
rs73735442	0.88[EUR][1000 genomes]
rs7752609	0.83[EUR][1000 genomes]
rs9349323	0.83[EUR][1000 genomes]
rs9357490	0.83[EUR][1000 genomes]
rs9369568	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9369569	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45611400-45618600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:45612400-45623600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:45614200-45618400	Enhancers	HSMM	muscle
4	chr6:45614400-45621000	Weak transcription	Right Atrium	heart
5	chr6:45615400-45620800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:45615600-45626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:45616200-45621000	Weak transcription	Dnd41	blood
8	chr6:45616800-45618600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:45616800-45618600	Weak transcription	Fetal Stomach	stomach
10	chr6:45617000-45618400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:45617000-45618400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:45617200-45621600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:45617400-45618400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:45617400-45619800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:45617400-45627400	Enhancers	NHDF-Ad	bronchial
16	chr6:45617600-45618400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:45617600-45618600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:45617600-45618600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:45617600-45618600	Enhancers	HUVEC	blood vessel
20	chr6:45617600-45618800	Enhancers	NH-A	brain
21	chr6:45617600-45619800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:45617600-45620200	Enhancers	HMEC	breast
23	chr6:45617800-45618400	Enhancers	Osteobl	bone
24	chr6:45617800-45619600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:45617800-45624200	Enhancers	NHEK	skin
26	chr6:45617800-45627200	Enhancers	NHLF	lung
27	chr6:45618000-45619000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr6:45618000-45619200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:45618000-45619400	Enhancers	A549	lung
30	chr6:45618000-45619800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:45618000-45619800	Enhancers	HSMMtube	muscle
32	chr6:45618000-45620200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:45618200-45618400	Flanking Active TSS	Hela-S3	cervix
34	chr6:45618200-45618800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:45618200-45621200	Enhancers	Fetal Lung	lung
36	chr6:45618200-45621800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:45618200-45627200	Weak transcription	Gastric	stomach

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