Variant report

Variant	rs73735442
Chromosome Location	chr6:45672965-45672966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10948245	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948246	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10948248	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524499	0.85[EUR][1000 genomes]
rs1388243	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16873629	0.89[EUR][1000 genomes]
rs28579170	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3925761	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4714863	0.81[EUR][1000 genomes]
rs6919919	0.84[ASN][1000 genomes]
rs73735437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752609	0.81[EUR][1000 genomes]
rs9349323	0.81[EUR][1000 genomes]
rs9357490	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9369568	0.89[EUR][1000 genomes]
rs9369569	0.81[EUR][1000 genomes]
rs9381392	0.88[EUR][1000 genomes]
rs9472555	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:45671000-45678000	Weak transcription	NHLF	lung
3	chr6:45671200-45678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:45671600-45673200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:45672000-45673000	Enhancers	HSMM	muscle
6	chr6:45672400-45673800	Weak transcription	NH-A	brain
7	chr6:45672400-45677600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:45672400-45678000	Weak transcription	NHDF-Ad	bronchial
9	chr6:45672600-45673600	Weak transcription	HMEC	breast
10	chr6:45672600-45674000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:45672600-45677800	Weak transcription	Osteobl	bone
12	chr6:45672600-45678000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:45672800-45673600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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