Variant report

Variant	rs6919919
Chromosome Location	chr6:45666684-45666685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45662691..45665190-chr6:45666130..45668359,2	MCF-7	breast:
2	chr6:45664978..45667526-chr6:45671637..45673796,2	MCF-7	breast:
3	chr6:45643355..45645914-chr6:45665891..45668541,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10948245	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10948248	0.84[ASN][1000 genomes]
rs12175323	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12661654	0.83[JPT][hapmap]
rs12663985	0.82[JPT][hapmap]
rs1388242	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1388244	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1491139	0.88[ASN][1000 genomes]
rs1994682	0.83[JPT][hapmap]
rs2396505	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs321324	0.82[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs321325	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4326224	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs4714864	0.86[ASN][1000 genomes]
rs6458458	0.88[ASN][1000 genomes]
rs6935044	0.85[CEU][hapmap]
rs73735437	0.84[ASN][1000 genomes]
rs73735442	0.84[ASN][1000 genomes]
rs7762915	0.82[JPT][hapmap]
rs9349324	0.88[ASN][1000 genomes]
rs9357490	0.92[ASN][1000 genomes]
rs9369572	0.82[ASN][1000 genomes]
rs9395110	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9395111	0.82[ASN][1000 genomes]
rs9472548	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9472552	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs9472555	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472557	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45664200-45672400	Enhancers	Hela-S3	cervix
2	chr6:45664400-45667000	Enhancers	NHDF-Ad	bronchial
3	chr6:45664400-45667400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:45664600-45667000	Enhancers	HSMMtube	muscle
5	chr6:45666000-45667200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:45666000-45667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:45666000-45669000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:45666000-45670000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:45666000-45670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:45666000-45671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:45666200-45666800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:45666200-45670200	Weak transcription	NHLF	lung
13	chr6:45666200-45670600	Weak transcription	Osteobl	bone
14	chr6:45666200-45672000	Weak transcription	HSMM	muscle
15	chr6:45666400-45667600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:45666400-45670800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:45666600-45669600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:45666600-45670000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:45666600-45670000	Weak transcription	HMEC	breast
20	chr6:45666600-45670000	Weak transcription	NHEK	skin
21	chr6:45666600-45670200	Weak transcription	NH-A	brain
22	chr6:45666600-45670600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links