Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45670408..45672045-chr6:45672910..45674468,2	MCF-7	breast:
2	chr6:45671026..45673654-chr6:45673720..45675383,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10948245	1.00[CEU][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10948246	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10948248	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12524499	0.87[EUR][1000 genomes]
rs1388243	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1491139	0.80[ASN][1000 genomes]
rs16873629	0.83[EUR][1000 genomes]
rs321324	0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs321325	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs3925761	0.81[EUR][1000 genomes]
rs4714863	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4714864	0.82[ASN][1000 genomes]
rs6458458	0.80[ASN][1000 genomes]
rs6919919	0.92[ASN][1000 genomes]
rs73735437	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73735442	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752609	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9349323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9349324	0.80[ASN][1000 genomes]
rs9369568	0.83[EUR][1000 genomes]
rs9369569	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9381392	0.83[EUR][1000 genomes]
rs9472555	0.93[ASN][1000 genomes]
rs9472557	0.86[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:45671000-45678000	Weak transcription	NHLF	lung
3	chr6:45671200-45678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:45672400-45677600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:45672400-45678000	Weak transcription	NHDF-Ad	bronchial
6	chr6:45672600-45677800	Weak transcription	Osteobl	bone
7	chr6:45672600-45678000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:45673600-45675200	Weak transcription	Hela-S3	cervix
9	chr6:45673600-45677600	Enhancers	GM12878-XiMat	blood
10	chr6:45674000-45674400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:45674000-45675400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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