The 2.0 version of rSNPBase

Variant report

Variant rs12187790
Chromosome Location chr5:90236049-90236050
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:90225800-90236200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr5:90225800-90244000 Weak transcription H1 Cell Line embryonic stem cell
3 chr5:90228400-90239200 Weak transcription Aorta Aorta
4 chr5:90230400-90265200 Weak transcription K562 blood
5 chr5:90231600-90250800 Weak transcription H9 Cell Line embryonic stem cell
6 chr5:90234600-90236800 Enhancers HUVEC blood vessel
7 chr5:90234600-90237600 Enhancers A549 lung
8 chr5:90234800-90237000 Enhancers NHEK skin
9 chr5:90234800-90237600 Enhancers Pancreatic Islets Pancreatic Islet
10 chr5:90234800-90237800 Enhancers Colon Smooth Muscle Colon
11 chr5:90235000-90236800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr5:90235000-90236800 Enhancers NH-A brain
13 chr5:90235000-90237000 Enhancers Muscle Satellite Cultured Cells --
14 chr5:90235000-90237000 Enhancers Fetal Adrenal Gland Adrenal Gland
15 chr5:90235000-90237400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
16 chr5:90235000-90238400 Enhancers Fetal Kidney kidney
17 chr5:90235200-90236800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
18 chr5:90235200-90236800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:90235200-90237600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:90235200-90237600 Enhancers iPS-15b Cell Line embryonic stem cell
21 chr5:90235400-90236400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr5:90235400-90236400 Weak transcription Brain Germinal Matrix brain
23 chr5:90235600-90236200 Enhancers ES-WA7 Cell Line embryonic stem cell
24 chr5:90235600-90236800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr5:90235600-90237400 Enhancers HUES64 Cell Line embryonic stem cell
26 chr5:90235600-90237400 Enhancers Hela-S3 cervix
27 chr5:90235600-90238000 Enhancers Rectal Smooth Muscle rectum
28 chr5:90235800-90236400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr5:90235800-90236600 Enhancers HepG2 liver
30 chr5:90235800-90236800 Enhancers Fetal Stomach stomach
31 chr5:90235800-90236800 Enhancers Rectal Mucosa Donor 31 rectum
32 chr5:90235800-90236800 Enhancers HMEC breast
33 chr5:90235800-90237000 Enhancers Primary T helper naive cells from peripheral blood blood
34 chr5:90235800-90237600 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr5:90235800-90237600 Enhancers HUES48 Cell Line embryonic stem cell
36 chr5:90235800-90237600 Enhancers HUES6 Cell Line embryonic stem cell
37 chr5:90235800-90237600 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr5:90235800-90237600 Enhancers iPS-20b Cell Line embryonic stem cell
39 chr5:90236000-90236400 Enhancers NHLF lung
40 chr5:90236000-90236600 Enhancers Primary T helper cells PMA-I stimulated --
41 chr5:90236000-90236800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr5:90236000-90236800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr5:90236000-90236800 Enhancers HSMMtube muscle
44 chr5:90236000-90237000 Enhancers GM12878-XiMat blood
45 chr5:90236000-90237200 Enhancers Stomach Mucosa stomach
46 chr5:90236000-90237600 Enhancers Cortex derived primary cultured neurospheres brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015