The 2.0 version of rSNPBase

Variant report

Variant rs66509877
Chromosome Location chr5:90236895-90236896
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:90225800-90244000 Weak transcription H1 Cell Line embryonic stem cell
2 chr5:90228400-90239200 Weak transcription Aorta Aorta
3 chr5:90230400-90265200 Weak transcription K562 blood
4 chr5:90231600-90250800 Weak transcription H9 Cell Line embryonic stem cell
5 chr5:90234600-90237600 Enhancers A549 lung
6 chr5:90234800-90237000 Enhancers NHEK skin
7 chr5:90234800-90237600 Enhancers Pancreatic Islets Pancreatic Islet
8 chr5:90234800-90237800 Enhancers Colon Smooth Muscle Colon
9 chr5:90235000-90237000 Enhancers Muscle Satellite Cultured Cells --
10 chr5:90235000-90237000 Enhancers Fetal Adrenal Gland Adrenal Gland
11 chr5:90235000-90237400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
12 chr5:90235000-90238400 Enhancers Fetal Kidney kidney
13 chr5:90235200-90237600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr5:90235200-90237600 Enhancers iPS-15b Cell Line embryonic stem cell
15 chr5:90235600-90237400 Enhancers HUES64 Cell Line embryonic stem cell
16 chr5:90235600-90237400 Enhancers Hela-S3 cervix
17 chr5:90235600-90238000 Enhancers Rectal Smooth Muscle rectum
18 chr5:90235800-90237000 Enhancers Primary T helper naive cells from peripheral blood blood
19 chr5:90235800-90237600 Enhancers ES-I3 Cell Line embryonic stem cell
20 chr5:90235800-90237600 Enhancers HUES48 Cell Line embryonic stem cell
21 chr5:90235800-90237600 Enhancers HUES6 Cell Line embryonic stem cell
22 chr5:90235800-90237600 Enhancers iPS-18 Cell Line embryonic stem cell
23 chr5:90235800-90237600 Enhancers iPS-20b Cell Line embryonic stem cell
24 chr5:90236000-90237000 Enhancers GM12878-XiMat blood
25 chr5:90236000-90237200 Enhancers Stomach Mucosa stomach
26 chr5:90236000-90237600 Enhancers Cortex derived primary cultured neurospheres brain
27 chr5:90236200-90237000 Enhancers Primary T cells from cord blood blood
28 chr5:90236200-90237000 Enhancers Fetal Intestine Large intestine
29 chr5:90236200-90237600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr5:90236200-90237600 Enhancers Duodenum Smooth Muscle Duodenum
31 chr5:90236200-90237800 Enhancers Fetal Heart heart
32 chr5:90236400-90237000 Enhancers Brain Hippocampus Middle brain
33 chr5:90236400-90237600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
34 chr5:90236400-90237800 Enhancers Brain Germinal Matrix brain
35 chr5:90236600-90237000 Enhancers Fetal Intestine Small intestine
36 chr5:90236600-90243400 Weak transcription HepG2 liver
37 chr5:90236800-90237200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr5:90236800-90237200 Weak transcription Ovary ovary
39 chr5:90236800-90237200 Weak transcription HSMMtube muscle
40 chr5:90236800-90239400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr5:90236800-90239400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr5:90236800-90239400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr5:90236800-90239400 Weak transcription HMEC breast
44 chr5:90236800-90240000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr5:90236800-90263200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015