Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:60549933..60553711-chr5:60556075..60559631,4	MCF-7	breast:
2	chr5:60555601..60558433-chr5:60563419..60566177,2	K562	blood:
3	chr5:60554941..60557365-chr5:60625053..60627690,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10041973	0.86[EUR][1000 genomes]
rs10056472	0.85[ASN][1000 genomes]
rs10079115	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939888	0.81[AMR][1000 genomes]
rs10939890	0.81[AMR][1000 genomes]
rs10939894	0.83[ASN][1000 genomes]
rs10939895	0.81[ASN][1000 genomes]
rs12189426	0.81[AMR][1000 genomes]
rs12696979	0.81[AMR][1000 genomes]
rs12696980	0.81[AMR][1000 genomes]
rs12696981	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12696982	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13167234	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13167244	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs13167246	0.87[AFR][1000 genomes]
rs13187871	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs13355792	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4235485	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4315878	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4379148	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4441832	0.81[AMR][1000 genomes]
rs4540126	0.81[AMR][1000 genomes]
rs4640746	0.88[EUR][1000 genomes]
rs4700415	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6449523	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67749311	0.85[ASN][1000 genomes]
rs72759289	0.81[ASN][1000 genomes]
rs72759299	0.81[ASN][1000 genomes]
rs7721603	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60552600-60557600	Weak transcription	Right Atrium	heart
3	chr5:60553000-60557600	Weak transcription	Stomach Mucosa	stomach
4	chr5:60553800-60557400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:60556000-60557600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:60556000-60570200	Weak transcription	HSMM	muscle

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