Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:60550215-60551713	SK-N-SH	brain:	n/a	chr5:60550416-60550430 chr5:60550616-60550630
2	FOSL2	chr5:60550920-60551452	MCF-7	breast:	n/a	n/a
3	GATA2	chr5:60550836-60551615	SH-SY5Y	brain:	n/a	n/a
4	GATA3	chr5:60550845-60551553	MCF-7	breast:	n/a	n/a
5	JUND	chr5:60550922-60551465	MCF-7	breast:	n/a	n/a
6	HDAC2	chr5:60550862-60551440	MCF-7	breast:	n/a	n/a
7	GATA3	chr5:60550868-60551530	SH-SY5Y	brain:	n/a	n/a
8	SIN3AK20	chr5:60550777-60551541	MCF-7	breast:	n/a	n/a
9	GATA3	chr5:60550836-60551651	MCF-7	breast:	n/a	n/a
10	NR2F2	chr5:60550817-60551582	MCF-7	breast:	n/a	n/a
11	TEAD4	chr5:60550902-60551372	SK-N-SH	brain:	n/a	n/a
12	GATA3	chr5:60550802-60551477	SK-N-SH	brain:	n/a	n/a
13	TCF12	chr5:60550902-60551437	SK-N-SH	brain:	n/a	n/a
14	TFAP2C	chr5:60550848-60551333	Hela-S3	cervix:	n/a	chr5:60551131-60551146
15	FOSL2	chr5:60550860-60551450	MCF-7	breast:	n/a	n/a
16	SIN3AK20	chr5:60550824-60551682	MCF-7	breast:	n/a	n/a
17	TFAP2A	chr5:60550901-60551317	Hela-S3	cervix:	n/a	chr5:60551131-60551146
18	HDAC2	chr5:60550787-60551506	MCF-7	breast:	n/a	chr5:60550802-60550816
19	FOXM1	chr5:60550872-60551526	MCF-7	breast:	n/a	n/a
20	TCF12	chr5:60550879-60551545	SK-N-SH	brain:	n/a	n/a
21	GATA3	chr5:60550842-60551544	SK-N-SH	brain:	n/a	n/a
22	GATA3	chr5:60550702-60551750	MCF-7	breast:	n/a	n/a
23	NR2F2	chr5:60550832-60551574	MCF-7	breast:	n/a	n/a
24	EP300	chr5:60550822-60551531	MCF-7	breast:	n/a	n/a
25	EP300	chr5:60550929-60551398	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:60549933..60553711-chr5:60556075..60559631,4	MCF-7	breast:
2	chr5:60548575..60550984-chr5:60558808..60560811,2	K562	blood:
3	chr5:60461979..60463969-chr5:60549446..60551253,2	MCF-7	breast:
4	chr5:60549533..60551717-chr5:60626205..60628348,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:38)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60541800-60552600	Weak transcription	A549	lung
2	chr5:60546200-60551000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:60546400-60552000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:60549000-60552400	Weak transcription	Esophagus	oesophagus
5	chr5:60549200-60553000	Enhancers	Stomach Mucosa	stomach
6	chr5:60549600-60551200	Enhancers	Pancreas	Pancrea
7	chr5:60550200-60551000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:60550200-60552000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:60550400-60552200	Weak transcription	Ovary	ovary
10	chr5:60550400-60552600	Enhancers	NHEK	skin
11	chr5:60550400-60573400	Weak transcription	Gastric	stomach
12	chr5:60550800-60552400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:60550800-60552400	Enhancers	HMEC	breast
14	chr5:60550800-60552600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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