Variant report

Variant	rs13187871
Chromosome Location	chr5:60554657-60554658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10041973	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10056472	0.95[ASN][1000 genomes]
rs10062338	0.89[AMR][1000 genomes]
rs10079115	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10434526	0.80[AMR][1000 genomes]
rs10461467	0.85[AMR][1000 genomes]
rs10939894	0.93[ASN][1000 genomes]
rs10939895	0.91[ASN][1000 genomes]
rs11747588	0.86[ASN][1000 genomes]
rs11949390	0.88[ASN][1000 genomes]
rs12189420	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12518152	0.85[AMR][1000 genomes]
rs12696981	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12696982	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13167234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13167244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13167246	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13179814	0.86[ASN][1000 genomes]
rs13355792	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35310874	0.85[AMR][1000 genomes]
rs4235485	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4315878	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4379148	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4400074	0.89[AMR][1000 genomes]
rs4640746	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4699974	0.81[EUR][1000 genomes]
rs4699975	0.81[EUR][1000 genomes]
rs4700415	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62366231	0.86[ASN][1000 genomes]
rs6449523	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67749311	0.95[ASN][1000 genomes]
rs6864367	0.81[EUR][1000 genomes]
rs6867268	0.89[AMR][1000 genomes]
rs6867417	0.89[AMR][1000 genomes]
rs6885499	0.80[EUR][1000 genomes]
rs72759289	0.90[ASN][1000 genomes]
rs72759299	0.91[ASN][1000 genomes]
rs72761408	0.81[ASN][1000 genomes]
rs7448844	0.89[AMR][1000 genomes]
rs7721603	0.91[ASN][1000 genomes]
rs7737448	0.82[AMR][1000 genomes]
rs9291718	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60552600-60557600	Weak transcription	Right Atrium	heart
3	chr5:60553000-60557600	Weak transcription	Stomach Mucosa	stomach
4	chr5:60553800-60557400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links