Variant report

Variant	rs12191669
Chromosome Location	chr6:5906529-5906530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1001289	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1001290	0.88[ASN][1000 genomes]
rs10155695	1.00[ASN][1000 genomes]
rs10155777	0.94[ASN][1000 genomes]
rs11243038	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11243040	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191239	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12191308	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12193326	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195664	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12199406	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12211137	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12213320	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1590328	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6597169	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6597170	0.89[ASN][1000 genomes]
rs6597171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66487772	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66912941	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67655188	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68186549	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7744130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7744234	0.84[ASN][1000 genomes]
rs7745594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755613	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764824	0.84[ASN][1000 genomes]
rs7766117	0.84[ASN][1000 genomes]
rs7769375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7770163	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9502375	0.88[ASN][1000 genomes]
rs9504571	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9504576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9504579	0.98[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5904400-5907000	Enhancers	NHDF-Ad	bronchial
2	chr6:5905000-5906600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:5905000-5906600	Enhancers	Right Atrium	heart
4	chr6:5905000-5906600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:5905000-5906600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:5905000-5906600	Enhancers	NHLF	lung
7	chr6:5905000-5906800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:5905200-5906600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:5905200-5906600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:5905200-5906600	Enhancers	Adipose Nuclei	Adipose
11	chr6:5905200-5906800	Enhancers	Fetal Muscle Leg	muscle
12	chr6:5905400-5906600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:5905400-5906600	Enhancers	Brain Substantia Nigra	brain
14	chr6:5905400-5906600	Enhancers	Right Ventricle	heart
15	chr6:5905400-5906600	Enhancers	NH-A	brain
16	chr6:5905400-5906800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:5905600-5906600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:5905600-5906600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:5905600-5906600	Enhancers	NHEK	skin
20	chr6:5905600-5907000	Enhancers	HMEC	breast
21	chr6:5905800-5906600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:5905800-5906600	Enhancers	Esophagus	oesophagus
23	chr6:5905800-5906600	Enhancers	Fetal Muscle Trunk	muscle
24	chr6:5905800-5906600	Enhancers	Left Ventricle	heart
25	chr6:5905800-5906800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr6:5905800-5906800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:5905800-5907000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:5906000-5906600	Enhancers	Osteobl	bone
29	chr6:5906000-5907600	Enhancers	HSMMtube	muscle
30	chr6:5906200-5906600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:5906200-5906600	Enhancers	Colon Smooth Muscle	Colon
32	chr6:5906400-5906600	Enhancers	Stomach Smooth Muscle	stomach
33	chr6:5906400-5906800	Enhancers	HSMM	muscle

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