Variant report

Variant	rs6597170
Chromosome Location	chr6:5905459-5905460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1001289	0.88[ASN][1000 genomes]
rs1001290	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10155695	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10155777	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11243038	0.84[ASN][1000 genomes]
rs11243040	0.84[ASN][1000 genomes]
rs12191239	0.81[ASN][1000 genomes]
rs12191308	0.84[ASN][1000 genomes]
rs12191669	0.89[ASN][1000 genomes]
rs12193326	0.84[ASN][1000 genomes]
rs12199406	0.84[ASN][1000 genomes]
rs12211137	0.84[ASN][1000 genomes]
rs1590328	0.84[ASN][1000 genomes]
rs6597169	0.86[ASN][1000 genomes]
rs6597171	0.88[ASN][1000 genomes]
rs66487772	0.84[ASN][1000 genomes]
rs66912941	0.82[ASN][1000 genomes]
rs67655188	0.84[ASN][1000 genomes]
rs68186549	0.84[ASN][1000 genomes]
rs7744130	0.84[ASN][1000 genomes]
rs7744234	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7745594	0.84[ASN][1000 genomes]
rs7755613	0.89[ASN][1000 genomes]
rs7764824	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7766117	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769375	0.84[ASN][1000 genomes]
rs7770163	0.88[ASN][1000 genomes]
rs9502375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9504571	0.84[ASN][1000 genomes]
rs9504576	0.84[ASN][1000 genomes]
rs9504579	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5904400-5907000	Enhancers	NHDF-Ad	bronchial
2	chr6:5904800-5905800	Enhancers	HSMM	muscle
3	chr6:5905000-5905600	Enhancers	HSMMtube	muscle
4	chr6:5905000-5906600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:5905000-5906600	Enhancers	Right Atrium	heart
6	chr6:5905000-5906600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:5905000-5906600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:5905000-5906600	Enhancers	NHLF	lung
9	chr6:5905000-5906800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:5905200-5905600	Enhancers	Aorta	Aorta
11	chr6:5905200-5905600	Enhancers	Osteobl	bone
12	chr6:5905200-5905800	Enhancers	Stomach Smooth Muscle	stomach
13	chr6:5905200-5906200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:5905200-5906200	Enhancers	Fetal Stomach	stomach
15	chr6:5905200-5906400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:5905200-5906600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:5905200-5906600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:5905200-5906600	Enhancers	Adipose Nuclei	Adipose
19	chr6:5905200-5906800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:5905400-5905800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:5905400-5905800	Enhancers	Psoas Muscle	Psoas
22	chr6:5905400-5906600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:5905400-5906600	Enhancers	Brain Substantia Nigra	brain
24	chr6:5905400-5906600	Enhancers	Right Ventricle	heart
25	chr6:5905400-5906600	Enhancers	NH-A	brain
26	chr6:5905400-5906800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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