Variant report

Variant	rs12192897
Chromosome Location	chr6:15854472-15854473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484349	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12192963	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12209943	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7349936	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs742383	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7742894	0.84[AMR][1000 genomes]
rs7751000	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7751282	0.95[EUR][1000 genomes]
rs9367884	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9370833	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9370834	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476963	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15843000-15855400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:15850600-15855400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:15850800-15855400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:15850800-15855400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:15854400-15856000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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