Variant report

Variant	rs7742894
Chromosome Location	chr6:15890708-15890709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10484349	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10949321	0.91[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs10949329	0.85[CEU][hapmap]
rs12192897	0.84[AMR][1000 genomes]
rs12192963	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204956	0.91[CEU][hapmap]
rs12209943	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539422	0.90[CEU][hapmap]
rs7349936	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs742383	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7751000	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7751282	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476963	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15883400-15895800	Weak transcription	Esophagus	oesophagus
2	chr6:15885800-15891000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15888200-15892400	Weak transcription	Right Atrium	heart
4	chr6:15888600-15892400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:15888800-15890800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:15889600-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:15889600-15897400	Weak transcription	Spleen	Spleen
8	chr6:15889800-15895800	Weak transcription	Fetal Lung	lung
9	chr6:15890200-15892600	Weak transcription	Adipose Nuclei	Adipose
10	chr6:15890200-15897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links