Variant report

Variant	rs12209943
Chromosome Location	chr6:15870778-15870779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484349	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10949321	0.85[CEU][hapmap]
rs12192897	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12192963	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12204956	0.85[CEU][hapmap]
rs1539422	0.85[CEU][hapmap]
rs7349936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs742383	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742894	0.81[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7751000	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751282	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367884	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370833	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370834	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9476963	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12209943	MYLIP	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15863400-15872600	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:15864600-15871600	Weak transcription	Left Ventricle	heart
3	chr6:15868000-15871600	Weak transcription	Fetal Kidney	kidney
4	chr6:15869200-15872800	Weak transcription	K562	blood
5	chr6:15870000-15873200	Enhancers	HUVEC	blood vessel
6	chr6:15870200-15873200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15870400-15870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:15870400-15871000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:15870400-15871600	Enhancers	Adipose Nuclei	Adipose
10	chr6:15870400-15872800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:15870600-15870800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:15870600-15871000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:15870600-15871000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:15870600-15871000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:15870600-15873800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:15870600-15873800	Enhancers	NHDF-Ad	bronchial
17	chr6:15870600-15875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:15870600-15884200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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