Variant report
| Variant | rs12194551 |
|---|---|
| Chromosome Location | chr6:49791732-49791733 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CRISP1-1 | chr6:49791649-49791756 | XLOC_005740 |
| 2 | lnc-CRISP1-1 | chr6:49791649-49791756 | XLOC_005740 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:59)
| rs_ID | r2[population] |
|---|---|
| rs1053497 | 1.00[AFR][1000 genomes] |
| rs12191200 | 1.00[AFR][1000 genomes] |
| rs12191354 | 1.00[AFR][1000 genomes] |
| rs12191473 | 1.00[AFR][1000 genomes] |
| rs12193465 | 1.00[AFR][1000 genomes] |
| rs12193606 | 1.00[AFR][1000 genomes] |
| rs12194388 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12195902 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12196185 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12196205 | 1.00[AFR][1000 genomes] |
| rs12198253 | 1.00[AFR][1000 genomes] |
| rs12198652 | 1.00[AFR][1000 genomes] |
| rs12200231 | 1.00[AFR][1000 genomes] |
| rs12200365 | 1.00[AFR][1000 genomes] |
| rs12200699 | 1.00[AFR][1000 genomes] |
| rs12204651 | 1.00[AFR][1000 genomes] |
| rs12204917 | 1.00[AFR][1000 genomes] |
| rs12207762 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12209344 | 1.00[AFR][1000 genomes] |
| rs12209643 | 1.00[AFR][1000 genomes] |
| rs12209658 | 1.00[AFR][1000 genomes] |
| rs12211947 | 1.00[AFR][1000 genomes] |
| rs12212140 | 1.00[AFR][1000 genomes] |
| rs12213240 | 1.00[AFR][1000 genomes] |
| rs12213547 | 1.00[AFR][1000 genomes] |
| rs12216442 | 1.00[AFR][1000 genomes] |
| rs12216534 | 1.00[AFR][1000 genomes] |
| rs1572882 | 1.00[AFR][1000 genomes] |
| rs17663881 | 1.00[AFR][1000 genomes] |
| rs17663956 | 1.00[AFR][1000 genomes] |
| rs3209304 | 1.00[AFR][1000 genomes] |
| rs45595734 | 1.00[AFR][1000 genomes] |
| rs493206 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55824128 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs56118419 | 1.00[AFR][1000 genomes] |
| rs587310 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs593009 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs609103 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs609927 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62404901 | 1.00[AFR][1000 genomes] |
| rs62404902 | 1.00[AFR][1000 genomes] |
| rs62404905 | 1.00[AFR][1000 genomes] |
| rs62404906 | 1.00[AFR][1000 genomes] |
| rs62404907 | 1.00[AFR][1000 genomes] |
| rs62404910 | 1.00[AFR][1000 genomes] |
| rs62404911 | 1.00[AFR][1000 genomes] |
| rs62404912 | 1.00[AFR][1000 genomes] |
| rs62404913 | 1.00[AFR][1000 genomes] |
| rs62404914 | 1.00[AFR][1000 genomes] |
| rs62404915 | 1.00[AFR][1000 genomes] |
| rs62404939 | 1.00[AFR][1000 genomes] |
| rs62404940 | 1.00[AFR][1000 genomes] |
| rs684749 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs686522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6928271 | 1.00[AFR][1000 genomes] |
| rs700002 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7738293 | 1.00[AFR][1000 genomes] |
| rs780443 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9473667 | 0.99[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
