Variant report
| Variant | rs9473667 |
|---|---|
| Chromosome Location | chr6:49789042-49789043 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49784235..49786295-chr6:49788464..49790853,2 | K562 | blood: | |
| 2 | chr6:49785264..49787289-chr6:49788003..49790525,2 | MCF-7 | breast: | |
| 3 | chr6:49603094..49605918-chr6:49788536..49790418,2 | K562 | blood: | |
| 4 | chr6:49750237..49751818-chr6:49787588..49789848,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000112077 | Chromatin interaction |
| ENSG00000235122 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1053497 | 1.00[ASN][1000 genomes] |
| rs12194388 | 0.99[EUR][1000 genomes] |
| rs12194551 | 0.99[EUR][1000 genomes] |
| rs12195902 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12196185 | 0.99[EUR][1000 genomes] |
| rs12198437 | 0.88[CEU][hapmap] |
| rs12204917 | 1.00[ASN][1000 genomes] |
| rs12207762 | 0.99[EUR][1000 genomes] |
| rs12216442 | 1.00[ASN][1000 genomes] |
| rs12216534 | 1.00[ASN][1000 genomes] |
| rs17663881 | 1.00[ASN][1000 genomes] |
| rs493206 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55824128 | 0.96[EUR][1000 genomes] |
| rs593009 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs609103 | 0.99[EUR][1000 genomes] |
| rs609927 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs684749 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs686522 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs700002 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs780443 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9473668 | 0.94[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
