Variant report

Variant	rs609927
Chromosome Location	chr6:49779221-49779222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1053497	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12191200	1.00[AFR][1000 genomes]
rs12191354	1.00[AFR][1000 genomes]
rs12191473	1.00[AFR][1000 genomes]
rs12193465	1.00[AFR][1000 genomes]
rs12193606	1.00[AFR][1000 genomes]
rs12194388	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12194551	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12195902	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196185	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12196205	1.00[AFR][1000 genomes]
rs12198253	1.00[AFR][1000 genomes]
rs12198652	1.00[AFR][1000 genomes]
rs12200231	1.00[AFR][1000 genomes]
rs12200365	1.00[AFR][1000 genomes]
rs12200699	1.00[AFR][1000 genomes]
rs12204651	1.00[AFR][1000 genomes]
rs12204917	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12207762	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12209344	1.00[AFR][1000 genomes]
rs12209643	1.00[AFR][1000 genomes]
rs12209658	1.00[AFR][1000 genomes]
rs12211947	1.00[AFR][1000 genomes]
rs12212140	1.00[AFR][1000 genomes]
rs12213240	1.00[AFR][1000 genomes]
rs12213547	1.00[AFR][1000 genomes]
rs12216442	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12216534	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1572882	1.00[AFR][1000 genomes]
rs17663881	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17663956	1.00[AFR][1000 genomes]
rs3209304	1.00[AFR][1000 genomes]
rs45595734	1.00[AFR][1000 genomes]
rs493206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824128	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56118419	1.00[AFR][1000 genomes]
rs587310	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs593009	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62404901	1.00[AFR][1000 genomes]
rs62404902	1.00[AFR][1000 genomes]
rs62404905	1.00[AFR][1000 genomes]
rs62404906	1.00[AFR][1000 genomes]
rs62404907	1.00[AFR][1000 genomes]
rs62404910	1.00[AFR][1000 genomes]
rs62404911	1.00[AFR][1000 genomes]
rs62404912	1.00[AFR][1000 genomes]
rs62404913	1.00[AFR][1000 genomes]
rs62404914	1.00[AFR][1000 genomes]
rs62404915	1.00[AFR][1000 genomes]
rs62404939	1.00[AFR][1000 genomes]
rs62404940	1.00[AFR][1000 genomes]
rs684749	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs686522	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928271	1.00[AFR][1000 genomes]
rs700002	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738293	1.00[AFR][1000 genomes]
rs780443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9473667	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933942	chr6:49480550-50004231	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv933833	chr6:49515134-49961765	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv969302	chr6:49767553-49782099	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3434423	chr6:49771042-49788886	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49774200-49782600	Weak transcription	Fetal Intestine Large	intestine

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