Variant report

Variant	rs12195653
Chromosome Location	chr6:25958621-25958622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25951801..25954594-chr6:25956842..25959003,2	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10946800	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1115920	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1130000	0.80[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12209482	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1324084	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1436306	0.96[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1436307	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436308	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1436310	0.83[AMR][1000 genomes]
rs1540273	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1541987	0.96[CEU][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1800702	0.85[JPT][hapmap]
rs1816546	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865760	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2003208	0.81[ASN][1000 genomes]
rs2006736	0.84[JPT][hapmap]
rs2008015	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013063	0.80[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2032449	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs2032450	0.81[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2051544	0.84[JPT][hapmap]
rs2071297	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071298	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2071299	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2071300	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs2071301	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2097273	0.83[ASN][1000 genomes]
rs2157050	0.88[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2164485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2164487	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2328903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2794719	0.84[JPT][hapmap]
rs2794720	0.85[JPT][hapmap]
rs2876693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3752419	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs3752421	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3799371	0.96[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes]
rs3799372	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3799373	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3830057	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3846838	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4478388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4529296	0.85[JPT][hapmap]
rs56118523	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62394490	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6456705	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905887	0.92[EUR][1000 genomes]
rs6910138	0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6910174	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6915834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928951	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6929805	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6932113	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6938233	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6942196	0.84[JPT][hapmap]
rs7450342	0.87[CHB][hapmap]
rs7739966	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7749342	0.87[CHB][hapmap]
rs7753253	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs7757666	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7766342	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7766478	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7770139	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7772312	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs9295673	0.90[EUR][1000 genomes]
rs9295677	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9295678	0.81[ASN][1000 genomes]
rs9295679	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9295680	0.92[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9295681	0.96[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9295687	0.84[JPT][hapmap]
rs9295688	0.85[JPT][hapmap]
rs9348698	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9356991	0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9358891	0.92[EUR][1000 genomes]
rs9358892	0.90[EUR][1000 genomes]
rs9358893	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9358895	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9358896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9366634	0.84[JPT][hapmap]
rs9379801	0.87[CHB][hapmap]
rs9379802	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9379805	0.84[ASN][1000 genomes]
rs9379806	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9379807	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9379820	0.85[JPT][hapmap]
rs9379821	0.85[JPT][hapmap]
rs9379825	0.85[JPT][hapmap]
rs9393675	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9393676	0.81[ASN][1000 genomes]
rs9393677	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9393678	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9461224	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9461229	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9467636	0.96[CEU][hapmap];0.88[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9467641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467645	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467647	0.96[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9467652	0.96[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9467656	0.83[CEU][hapmap]
rs9467662	0.83[ASN][1000 genomes]
rs9467663	0.83[ASN][1000 genomes]
rs9467672	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	esv2755446	chr6:25924513-25981648	Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25955200-25959000	Weak transcription	HSMMtube	muscle
2	chr6:25956000-25963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:25958200-25959000	Enhancers	HepG2	liver
4	chr6:25958200-25959000	Enhancers	K562	blood
5	chr6:25958400-25959000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:25958400-25959000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:25958400-25959000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:25958400-25959200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:25958400-25959400	Enhancers	GM12878-XiMat	blood
10	chr6:25958400-25962200	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:25958600-25958800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:25958600-25959000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:25958600-25959000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:25958600-25959200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:25958600-25959600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:25958600-25959800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:25958600-25960400	Enhancers	HMEC	breast
18	chr6:25958600-25960600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:25958600-25962000	Enhancers	Primary T helper cells fromperipheralblood	blood

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