Variant report

Variant	rs3752419
Chromosome Location	chr6:26027433-26027434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:68)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:68 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
2	chr22:21354576..21357139-chr6:26025887..26028431,2	K562	blood:
3	chr19:2475696..2476199-chr6:26027113..26027730,2	HCT-116	colon:
4	chr6:26024260..26027949-chr6:26272859..26275159,3	MCF-7	breast:
5	chr1:33116434..33118067-chr6:26025894..26027633,2	MCF-7	breast:
6	chr4:178363048..178363731-chr6:26026908..26027720,2	HCT-116	colon:
7	chr6:26026024..26027759-chr6:26164190..26165983,2	MCF-7	breast:
8	chr6:26025967..26028344-chr6:26231112..26233437,2	MCF-7	breast:
9	chr16:4523629..4524549-chr6:26027363..26027882,2	NB4	blood:
10	chr6:25725904..25728723-chr6:26024464..26030208,7	K562	blood:
11	chr6:20401760..20404654-chr6:26027213..26030281,4	K562	blood:
12	chr5:54830348..54831326-chr6:26027179..26027719,2	HCT-116	colon:
13	chr6:26026863..26028475-chr6:26270245..26272373,2	MCF-7	breast:
14	chr1:154946347..154946945-chr6:26027075..26027760,2	Hela-S3	cervix:
15	chr6:26026421..26028789-chr6:26203336..26205903,2	MCF-7	breast:
16	chr6:26017750..26036418-chr6:26116875..26130553,65	MCF-7	breast:
17	chr20:10412792..10415646-chr6:26026013..26027759,2	MCF-7	breast:
18	chr2:9695121..9697810-chr6:26026527..26029507,2	MCF-7	breast:
19	chr6:25868103..25870310-chr6:26025441..26027825,2	K562	blood:
20	chr1:245027944..245028500-chr6:26026864..26027527,2	HCT-116	colon:
21	chr6:26026035..26027624-chr6:27806330..27807928,2	K562	blood:
22	chr6:26025218..26027872-chr6:27113164..27115614,4	MCF-7	breast:
23	chr6:26024741..26028835-chr6:26213584..26218792,8	MCF-7	breast:
24	chr6:26027372..26030332-chr9:140134858..140136489,2	K562	blood:
25	chr11:134093873..134094506-chr6:26026754..26027733,2	NB4	blood:
26	chr6:25991732..25993497-chr6:26025765..26028422,2	MCF-7	breast:
27	chr6:26026020..26027714-chr6:27113158..27114854,2	K562	blood:
28	chr17:79826225..79829012-chr6:26026159..26027799,2	K562	blood:
29	chr1:193090705..193091372-chr6:26026962..26027890,2	HCT-116	colon:
30	chr15:65587818..65589670-chr6:26025998..26027787,2	MCF-7	breast:
31	chr6:16128760..16131602-chr6:26025170..26028391,3	K562	blood:
32	chr6:26025221..26028451-chr6:27796635..27801025,4	K562	blood:
33	chr6:26024161..26035534-chr6:27093020..27104638,25	K562	blood:
34	chr6:26025403..26028129-chr6:27797100..27800385,4	MCF-7	breast:
35	chr6:26019620..26034082-chr6:26100355..26110400,33	MCF-7	breast:
36	chr6:26025188..26029060-chr6:27836295..27841543,4	MCF-7	breast:
37	chr1:149223747..149224475-chr6:26027117..26027921,2	HCT-116	colon:
38	chr6:17705633..17708483-chr6:26025891..26028298,2	K562	blood:
39	chr6:26025697..26028574-chr6:27100456..27102922,3	MCF-7	breast:
40	chr6:25724700..25728805-chr6:26024464..26033486,16	K562	blood:
41	chr5:40835027..40836016-chr6:26027064..26027809,2	Hela-S3	cervix:
42	chr4:152329542..152330364-chr6:26026932..26027811,2	Hela-S3	cervix:
43	chr6:26025755..26029009-chr6:27774713..27777489,4	MCF-7	breast:
44	chr1:229643729..229645808-chr6:26026658..26028506,2	MCF-7	breast:
45	chr11:61582896..61583743-chr6:26026958..26027621,2	Hela-S3	cervix:
46	chr6:26026115..26036040-chr6:27097153..27104835,26	K562	blood:
47	chr6:26026990..26027551-chr7:25164605..25165131,2	Hela-S3	cervix:
48	chr11:65268214..65271270-chr6:26025584..26028816,3	K562	blood:
49	chr6:26019525..26036768-chr6:26154463..26163826,38	MCF-7	breast:
50	chr1:210546248..210548847-chr6:26026760..26029454,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188229	Chromatin interaction
ENSG00000149485	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000272462	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000160691	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000069248	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000162521	Chromatin interaction
ENSG00000273175	Chromatin interaction
ENSG00000175711	Chromatin interaction
ENSG00000151694	Chromatin interaction
ENSG00000230513	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000124789	Chromatin interaction
ENSG00000223635	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000120738	Chromatin interaction
ENSG00000251611	Chromatin interaction
ENSG00000272269	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000146047	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000134824	Chromatin interaction
ENSG00000129226	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000072310	Chromatin interaction
ENSG00000164508	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000112592	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000200309	Chromatin interaction
ENSG00000099860	Chromatin interaction
ENSG00000153406	Chromatin interaction
ENSG00000112308	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000125863	Chromatin interaction
ENSG00000271855	Chromatin interaction
ENSG00000142541	Chromatin interaction
ENSG00000102699	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000067113	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000176261	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000217159	Chromatin interaction
ENSG00000124564	Chromatin interaction
ENSG00000172115	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000184436	Chromatin interaction
ENSG00000134371	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000007944	Chromatin interaction
ENSG00000176105	Chromatin interaction
ENSG00000038002	Chromatin interaction
ENSG00000151503	Chromatin interaction
ENSG00000199631	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000218281	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000141522	Chromatin interaction
ENSG00000198558	Chromatin interaction

Extended variants
information (count: 103 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1061482	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10807006	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10807007	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1130000	0.89[CEU][hapmap];0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12195653	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs1539183	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1800702	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1865760	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs1971509	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2006736	0.96[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2013063	0.89[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032443	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2032444	0.81[MKK][hapmap]
rs2032445	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2032449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2032450	0.89[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2051544	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2071297	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs2071298	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs2071299	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs2071300	0.83[CHD][hapmap]
rs2071301	0.89[CHD][hapmap]
rs2157050	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2328903	0.82[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap]
rs2328905	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2794719	0.89[ASW][hapmap];0.92[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2794720	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2858993	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2876693	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs2876694	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3752420	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3752421	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs3799371	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs4529296	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6910174	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs6928717	0.91[AMR][1000 genomes]
rs6928951	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932113	0.89[CHD][hapmap]
rs6938083	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6938233	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs6942196	0.89[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7450342	0.83[CHD][hapmap]
rs7738854	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7749342	0.83[CHD][hapmap]
rs7753253	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753826	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7766342	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7770139	0.89[CHD][hapmap];0.83[MEX][hapmap]
rs7772312	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9295684	0.85[AMR][1000 genomes]
rs9295685	0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9295686	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9295687	0.89[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9295688	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9348706	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9356991	0.88[CHD][hapmap];0.83[MEX][hapmap]
rs9356998	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9358896	0.82[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap]
rs9358902	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358903	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs9358904	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9358905	0.80[AMR][1000 genomes]
rs9366634	0.89[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9366636	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9379815	0.80[AMR][1000 genomes]
rs9379818	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9379819	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9379820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9379821	0.88[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9379823	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9379825	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9393681	0.89[CEU][hapmap];0.85[GIH][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs9393683	0.89[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes]
rs9393684	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9461229	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9461230	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9467646	0.82[CHB][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap]
rs9467656	0.83[CEU][hapmap];0.80[AMR][1000 genomes]
rs9467658	0.86[AMR][1000 genomes]
rs9467662	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467663	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9467672	0.96[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs3752419	BTN3A2	cis	cerebellum	SCAN
rs3752419	U91328.19	cis	Muscle Skeletal	GTEx
rs3752419	U91328.19	cis	Adipose Subcutaneous	GTEx
rs3752419	HIST1H2AH	cis	parietal	SCAN
rs3752419	HIST1H3H	cis	parietal	SCAN
rs3752419	HIST1H2AA	cis	parietal	SCAN
rs3752419	TRIM38	cis	lymphoblastoid	seeQTL
rs3752419	HIST1H2BC	cis	cerebellum	SCAN
rs3752419	HIST1H1C	cis	parietal	SCAN
rs3752419	HIST1H3B	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26025600-26028400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:26025600-26028800	Active TSS	Thymus	Thymus
3	chr6:26025800-26028000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:26025800-26028000	Active TSS	Colonic Mucosa	Colon
5	chr6:26025800-26028400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:26026000-26028000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:26026000-26028200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:26026200-26027600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:26026200-26027800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:26026200-26028000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:26026200-26028000	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr6:26026200-26028000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:26026200-26028000	Active TSS	Fetal Muscle Trunk	muscle
14	chr6:26026200-26028200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:26026200-26028200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
16	chr6:26026200-26028200	Active TSS	Fetal Brain Female	brain
17	chr6:26026400-26027600	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:26026400-26027600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:26026400-26027600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:26026400-26027600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:26026400-26027600	Active TSS	Esophagus	oesophagus
22	chr6:26026400-26027600	Active TSS	Left Ventricle	heart
23	chr6:26026400-26027800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr6:26026400-26027800	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr6:26026400-26027800	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:26026400-26027800	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:26026400-26027800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:26026400-26027800	Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr6:26026400-26027800	Active TSS	Brain Substantia Nigra	brain
30	chr6:26026400-26027800	Active TSS	Fetal Heart	heart
31	chr6:26026400-26027800	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr6:26026400-26027800	Active TSS	Right Ventricle	heart
33	chr6:26026400-26027800	Active TSS	HSMM	muscle
34	chr6:26026400-26027800	Active TSS	K562	blood
35	chr6:26026400-26028000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:26026400-26028000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:26026400-26028000	Active TSS	Brain Angular Gyrus	brain
38	chr6:26026400-26028000	Active TSS	Fetal Stomach	stomach
39	chr6:26026400-26028000	Active TSS	Psoas Muscle	Psoas
40	chr6:26026400-26028000	Active TSS	Stomach Mucosa	stomach
41	chr6:26026400-26028000	Active TSS	A549	lung
42	chr6:26026400-26028000	Active TSS	HSMMtube	muscle
43	chr6:26026400-26028000	Active TSS	NHLF	lung
44	chr6:26026400-26028200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:26026400-26028200	Active TSS	Fetal Kidney	kidney
46	chr6:26026400-26028400	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr6:26026400-26028400	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr6:26026600-26027600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:26026600-26027600	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:26026600-26027600	Active TSS	iPS-18 Cell Line	embryonic stem cell

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