Variant report

Variant	rs12195735
Chromosome Location	chr6:133035680-133035681
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1044593	0.82[CEU][hapmap]
rs11154689	1.00[ASW][hapmap]
rs2050154	0.80[EUR][1000 genomes]
rs2223613	0.83[TSI][hapmap]
rs2251449	0.82[CEU][hapmap]
rs2251455	0.81[CEU][hapmap]
rs2745426	0.82[CEU][hapmap];0.86[TSI][hapmap]
rs2745427	0.82[CEU][hapmap]
rs2745429	0.82[CEU][hapmap]
rs2745431	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs2745440	0.82[CEU][hapmap]
rs3823026	0.82[CEU][hapmap]
rs4380767	1.00[ASW][hapmap];0.93[CHD][hapmap]
rs6941705	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs909977	0.82[CEU][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12195735	BCLAF1	cis	parietal	SCAN
rs12195735	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133033600-133035800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr6:133033800-133036600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:133034600-133035800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
5	chr6:133035200-133036200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:133035200-133038600	Weak transcription	Stomach Mucosa	stomach
7	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:133035600-133035800	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:133035600-133037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:133035600-133037600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:133035600-133037600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:133035600-133038000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:133035600-133038200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:133035600-133040400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:133035600-133040400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:133035600-133041200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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