Variant report

Variant	rs12195791
Chromosome Location	chr6:72205132-72205133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10455234	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10455235	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12190640	0.81[JPT][hapmap]
rs12196715	0.83[ASN][1000 genomes]
rs12196908	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12202768	0.89[ASN][1000 genomes]
rs12204199	0.83[ASN][1000 genomes]
rs12205019	0.83[ASN][1000 genomes]
rs12206174	0.83[ASN][1000 genomes]
rs12207845	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12208819	0.83[ASN][1000 genomes]
rs12524965	0.83[ASN][1000 genomes]
rs1527712	0.90[ASN][1000 genomes]
rs499738	0.90[ASN][1000 genomes]
rs548214	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72198400-72205200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:72199600-72205600	Weak transcription	Aorta	Aorta
4	chr6:72200000-72205200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:72200200-72205200	Weak transcription	Osteobl	bone
6	chr6:72200200-72205400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:72200400-72205200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:72200400-72205200	Weak transcription	HUVEC	blood vessel
9	chr6:72200800-72205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:72201000-72205200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:72201000-72205200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:72201000-72206400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:72201400-72205200	Weak transcription	HSMMtube	muscle
14	chr6:72201600-72205200	Weak transcription	HSMM	muscle
15	chr6:72202400-72205600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:72204400-72205800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:72204800-72205200	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:72205000-72205400	Enhancers	Primary B cells from cord blood	blood
19	chr6:72205000-72205400	Enhancers	NHLF	lung
20	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells	blood
21	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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