Variant report

Variant	rs12202768
Chromosome Location	chr6:72214041-72214042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72102188..72105063-chr6:72213344..72216016,2	MCF-7	breast:
2	chr6:72212184..72214123-chr6:72218579..72220486,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10455234	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10455235	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10455236	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10805938	0.86[EUR][1000 genomes]
rs10942950	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10942952	0.81[ASN][1000 genomes]
rs1156360	0.85[EUR][1000 genomes]
rs12190640	0.81[ASN][1000 genomes]
rs12195280	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12195791	0.89[ASN][1000 genomes]
rs12196715	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12196908	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12197937	0.81[ASN][1000 genomes]
rs12198869	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12198962	0.85[EUR][1000 genomes]
rs12202510	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12202744	0.85[EUR][1000 genomes]
rs12204199	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12204236	0.85[EUR][1000 genomes]
rs12204508	0.86[EUR][1000 genomes]
rs12205019	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206174	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206434	0.86[EUR][1000 genomes]
rs12207845	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12208819	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210244	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12213508	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12214509	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12214865	0.81[ASN][1000 genomes]
rs12524773	0.81[ASN][1000 genomes]
rs12524965	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12525003	0.86[EUR][1000 genomes]
rs12528422	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13204740	0.86[EUR][1000 genomes]
rs1527712	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1814045	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs199622	0.81[EUR][1000 genomes]
rs199640	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2129327	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4707918	0.81[ASN][1000 genomes]
rs499738	0.99[ASN][1000 genomes]
rs548214	0.99[ASN][1000 genomes]
rs62404028	0.86[EUR][1000 genomes]
rs62404029	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62404039	0.86[EUR][1000 genomes]
rs6922155	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9358958	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72206200-72218600	Weak transcription	Aorta	Aorta
2	chr6:72206600-72218400	Weak transcription	Fetal Lung	lung
3	chr6:72210400-72219000	Weak transcription	Fetal Kidney	kidney

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