Variant report

Variant	rs12198869
Chromosome Location	chr6:72242205-72242206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10455236	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10805938	0.84[AFR][1000 genomes]
rs10942950	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1156360	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12195280	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12196715	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12196908	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12198962	0.84[AFR][1000 genomes]
rs12202510	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12202744	0.84[AFR][1000 genomes]
rs12202768	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12204199	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12204236	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12204508	0.80[ASN][1000 genomes]
rs12205019	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12206174	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12206434	0.84[AFR][1000 genomes]
rs12207845	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12208819	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12210244	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12213508	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12214509	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12524965	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12525003	0.84[AFR][1000 genomes]
rs12528422	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13204740	0.80[ASN][1000 genomes]
rs1527712	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1814045	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs199640	0.84[EUR][1000 genomes]
rs2129327	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62404028	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62404029	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62404039	0.84[AFR][1000 genomes]
rs6922155	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9358958	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72241000-72243000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72241800-72244600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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