Variant report

Variant	rs1527712
Chromosome Location	chr6:72209222-72209223
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72199284..72202242-chr6:72207805..72209852,2	MCF-7	breast:
2	chr6:72200765..72203412-chr6:72209014..72210877,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10455234	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10455235	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10455236	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10805938	0.84[EUR][1000 genomes]
rs10942950	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10942952	0.81[ASN][1000 genomes]
rs1156360	0.83[EUR][1000 genomes]
rs12195280	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12195791	0.90[ASN][1000 genomes]
rs12196715	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12196908	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197937	0.81[ASN][1000 genomes]
rs12198869	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12198962	0.83[EUR][1000 genomes]
rs12202510	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12202744	0.83[EUR][1000 genomes]
rs12202768	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12204199	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12204236	0.83[EUR][1000 genomes]
rs12204508	0.84[EUR][1000 genomes]
rs12205019	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206174	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12206434	0.84[EUR][1000 genomes]
rs12207845	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208819	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12210244	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213508	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12214509	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12214865	0.81[ASN][1000 genomes]
rs12524965	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12525003	0.84[EUR][1000 genomes]
rs12528422	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13204740	0.84[EUR][1000 genomes]
rs1814045	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs199640	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2129327	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs499738	1.00[ASN][1000 genomes]
rs548214	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62404028	0.84[EUR][1000 genomes]
rs62404029	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62404039	0.84[EUR][1000 genomes]
rs6922155	0.92[EUR][1000 genomes]
rs9358958	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72206200-72210000	Weak transcription	Fetal Kidney	kidney
3	chr6:72206200-72218600	Weak transcription	Aorta	Aorta
4	chr6:72206600-72212600	Weak transcription	HSMMtube	muscle
5	chr6:72206600-72213400	Weak transcription	NHLF	lung
6	chr6:72206600-72218400	Weak transcription	Fetal Lung	lung
7	chr6:72206800-72209400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:72206800-72209400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:72206800-72209400	Weak transcription	Osteobl	bone
10	chr6:72206800-72209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:72208600-72209600	Enhancers	Liver	Liver
12	chr6:72209200-72209800	Enhancers	Muscle Satellite Cultured Cells	--

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