Variant report

Variant	rs10942950
Chromosome Location	chr6:72236221-72236222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10455234	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10455235	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10455236	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10805938	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10942952	0.83[ASN][1000 genomes]
rs1156360	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12190640	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12195280	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12196715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12196908	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12197937	0.83[ASN][1000 genomes]
rs12198869	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12198962	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12202510	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12202744	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12202768	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12204199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12204236	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12204508	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12205019	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206434	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12207845	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12208819	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12210244	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12213508	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12214509	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12214865	0.83[ASN][1000 genomes]
rs12524773	0.82[ASN][1000 genomes]
rs12524965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12525003	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12528422	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13204740	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1527712	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1814045	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs199622	0.81[EUR][1000 genomes]
rs199640	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2129327	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4707918	0.82[ASN][1000 genomes]
rs499738	0.89[ASN][1000 genomes]
rs548214	0.89[ASN][1000 genomes]
rs62404028	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62404029	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62404039	0.86[EUR][1000 genomes]
rs6922155	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9358958	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	esv2763575	chr6:72227746-72240130	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72234800-72237000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:72236000-72239400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:72236200-72236400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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