Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GAT2-7	chr6:72260661-72261346	NONHSAT113521

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10942950	0.83[ASN][1000 genomes]
rs10942952	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190640	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12196715	0.87[ASN][1000 genomes]
rs12196908	0.81[ASN][1000 genomes]
rs12197937	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202768	0.81[ASN][1000 genomes]
rs12204199	0.87[ASN][1000 genomes]
rs12205019	0.87[ASN][1000 genomes]
rs12206174	0.87[ASN][1000 genomes]
rs12207845	0.81[ASN][1000 genomes]
rs12208819	0.87[ASN][1000 genomes]
rs12524773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524965	0.87[ASN][1000 genomes]
rs1527712	0.81[ASN][1000 genomes]
rs2220291	0.88[CEU][hapmap]
rs4707918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs499738	0.81[ASN][1000 genomes]
rs548214	0.81[ASN][1000 genomes]
rs60181928	0.81[EUR][1000 genomes]
rs60825596	0.81[EUR][1000 genomes]
rs62404288	0.81[EUR][1000 genomes]
rs73750711	0.81[EUR][1000 genomes]
rs9350421	0.84[CEU][hapmap]
rs9351841	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3438952	chr6:72257531-72262329	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72256200-72261600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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