Variant report
| Variant | rs9350421 |
|---|---|
| Chromosome Location | chr6:72365197-72365198 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:72364309..72367260-chr6:72370089..72372248,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10455240 | 0.87[AMR][1000 genomes] |
| rs10942957 | 0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12173946 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12190640 | 0.84[CEU][hapmap] |
| rs12193188 | 0.87[AMR][1000 genomes] |
| rs12211666 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2200527 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2220290 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2220291 | 0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs62404288 | 0.81[AMR][1000 genomes] |
| rs62404298 | 0.80[AMR][1000 genomes] |
| rs62404300 | 0.87[AMR][1000 genomes] |
| rs62407661 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62408732 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73750712 | 0.84[AMR][1000 genomes] |
| rs9341336 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9342864 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs9342866 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9350422 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9351841 | 0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs9351843 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9358968 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9360480 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9360481 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9360482 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9360484 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830685 | chr6:72244007-72410757 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv830686 | chr6:72336896-72534267 | Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
