Variant report

Variant	rs9342864
Chromosome Location	chr6:72366851-72366852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10942957	0.92[ASN][1000 genomes]
rs12173946	0.84[ASN][1000 genomes]
rs2220290	0.90[ASN][1000 genomes]
rs2220291	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs62407661	0.84[ASN][1000 genomes]
rs62408732	0.85[ASN][1000 genomes]
rs9341336	0.84[ASN][1000 genomes]
rs9342866	0.81[ASN][1000 genomes]
rs9350421	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9350422	0.84[ASN][1000 genomes]
rs9351841	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs9351843	0.83[ASN][1000 genomes]
rs9358968	0.84[ASN][1000 genomes]
rs9360480	0.84[ASN][1000 genomes]
rs9360481	0.84[ASN][1000 genomes]
rs9360482	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9342864	LMBRD1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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