Variant report

Variant	rs12173946
Chromosome Location	chr6:72377779-72377780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10455240	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10942957	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12055765	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12190640	0.88[CEU][hapmap]
rs12193188	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12211666	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2200527	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2220290	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2220291	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs4707934	0.82[ASN][1000 genomes]
rs60502272	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62404298	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62404300	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62407661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62407672	0.82[ASN][1000 genomes]
rs62408732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6925887	0.87[CEU][hapmap]
rs9341336	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342864	0.92[JPT][hapmap]
rs9342866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9342868	0.82[ASN][1000 genomes]
rs9350421	0.92[CEU][hapmap]
rs9350422	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351841	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap]
rs9351843	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9351847	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9358968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358970	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9358971	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9360480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360484	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9360487	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72372000-72383200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:72377600-72378200	Enhancers	Fetal Intestine Small	intestine

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