Variant report

Variant	rs60502272
Chromosome Location	chr6:72435788-72435789
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:72426583..72429293-chr6:72434141..72436449,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11965010	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12055765	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12173946	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2220290	0.80[ASN][1000 genomes]
rs4707934	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62407661	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62407672	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62408732	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9341336	0.81[ASN][1000 genomes]
rs9342866	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9342868	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350422	0.81[ASN][1000 genomes]
rs9351843	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9351847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9358968	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9358970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9358971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9360480	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9360481	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9360482	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9360484	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9360487	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72421000-72443400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:72430800-72436200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:72432000-72437600	Weak transcription	Osteobl	bone
4	chr6:72434600-72437200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:72434800-72437200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:72435000-72437200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:72435200-72439200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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