Variant report

Variant	rs4707934
Chromosome Location	chr6:72447048-72447049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11965010	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12055765	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12173946	0.82[ASN][1000 genomes]
rs2220290	0.81[ASN][1000 genomes]
rs2220291	0.87[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs60502272	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62407661	0.82[ASN][1000 genomes]
rs62407672	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62408732	0.84[ASN][1000 genomes]
rs9341336	0.82[ASN][1000 genomes]
rs9342864	0.87[ASW][hapmap];0.81[CHD][hapmap];0.92[JPT][hapmap]
rs9342866	0.93[ASN][1000 genomes]
rs9342868	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9350421	0.89[JPT][hapmap]
rs9350422	0.82[ASN][1000 genomes]
rs9351841	0.87[CHD][hapmap];0.92[JPT][hapmap];0.82[MEX][hapmap]
rs9351843	0.81[ASN][1000 genomes]
rs9351847	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358968	0.82[ASN][1000 genomes]
rs9358970	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9358971	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360480	0.82[ASN][1000 genomes]
rs9360481	0.82[ASN][1000 genomes]
rs9360482	0.82[ASN][1000 genomes]
rs9360484	0.97[ASN][1000 genomes]
rs9360487	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4707934	LMBRD1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72444200-72447800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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