Variant report

Variant	rs10455240
Chromosome Location	chr6:72307609-72307610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10942957	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12173946	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12190640	0.88[CEU][hapmap]
rs12193188	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12211666	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2200527	0.81[EUR][1000 genomes]
rs2220290	0.85[EUR][1000 genomes]
rs2220291	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs60181928	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60825596	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62404288	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62404298	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62404300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62407661	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62408732	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6925887	0.87[CEU][hapmap]
rs73750711	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73750712	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341336	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9342864	0.92[JPT][hapmap]
rs9342866	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9350421	0.92[CEU][hapmap];0.90[JPT][hapmap]
rs9350422	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9351841	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap]
rs9351843	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9358968	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9360480	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9360481	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9360482	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72307400-72310200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:72307600-72312000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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