Variant report

Variant	rs12211666
Chromosome Location	chr6:72319079-72319080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10455240	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10942957	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12173946	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12193188	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2200527	0.85[EUR][1000 genomes]
rs2220290	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2220291	0.86[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs60181928	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60825596	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62404288	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62404298	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62404300	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62407661	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62408732	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73750711	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73750712	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9341336	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9342864	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9342866	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9350421	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs9350422	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9351841	0.86[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs9351843	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9358968	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9360480	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9360481	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9360482	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9360484	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72318600-72319800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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