Variant report
| Variant | rs60181928 |
|---|---|
| Chromosome Location | chr6:72292687-72292688 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SPI1 | chr6:72292423-72292784 | HL-60 | blood: | n/a | chr6:72292570-72292579 chr6:72292568-72292581 chr6:72292567-72292580 chr6:72292571-72292578 |
| 2 | SPI1 | chr6:72292362-72292813 | HL-60 | blood: | n/a | chr6:72292570-72292579 chr6:72292568-72292581 chr6:72292567-72292580 chr6:72292571-72292578 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KRT19P1 | TF binding region |
| ENSG00000211530 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10455240 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10942952 | 0.80[EUR][1000 genomes] |
| rs10942957 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12193188 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12197937 | 0.80[EUR][1000 genomes] |
| rs12211666 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12214865 | 0.81[EUR][1000 genomes] |
| rs12524773 | 0.81[EUR][1000 genomes] |
| rs4707918 | 0.81[EUR][1000 genomes] |
| rs60825596 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62404288 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62404298 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62404300 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6904923 | 0.85[EUR][1000 genomes] |
| rs6925887 | 0.85[EUR][1000 genomes] |
| rs73750711 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73750712 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9446419 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830685 | chr6:72244007-72410757 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:72289400-72295400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
