Variant report

Variant	rs2200527
Chromosome Location	chr6:72372493-72372494
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10455240	0.81[EUR][1000 genomes]
rs10942957	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12173946	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12193188	0.81[EUR][1000 genomes]
rs12211666	0.85[EUR][1000 genomes]
rs2220290	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62404298	0.81[EUR][1000 genomes]
rs62404300	0.83[EUR][1000 genomes]
rs62407661	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62408732	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9341336	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9342866	0.91[EUR][1000 genomes]
rs9350422	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9351843	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9358968	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360480	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360481	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360482	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9360484	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830685	chr6:72244007-72410757	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830686	chr6:72336896-72534267	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72372000-72375400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:72372000-72383200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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