Variant report
| Variant | rs12196298 |
|---|---|
| Chromosome Location | chr6:146354425-146354426 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:146337459..146340301-chr6:146352886..146354448,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10447450 | 0.97[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10457789 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10457790 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11232 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12189548 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12192366 | 0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12198683 | 0.81[ASN][1000 genomes] |
| rs12200649 | 0.90[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12212636 | 0.87[ASN][1000 genomes] |
| rs12214668 | 0.97[MKK][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12216492 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13209322 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17225973 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34211445 | 0.87[ASN][1000 genomes] |
| rs35765437 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3811105 | 0.85[CEU][hapmap];0.91[GIH][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3923580 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs714680 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604839 | chr6:146305810-146828922 | Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029440 | chr6:146349442-146407453 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:146354000-146355200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
