Variant report

Variant	rs34211445
Chromosome Location	chr6:146188902-146188903
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:146187673..146189565-chr6:146204450..146206308,2	K562	blood:
2	chr6:146183728..146187518-chr6:146188005..146191781,5	K562	blood:
3	chr6:146183079..146185485-chr6:146188152..146189711,2	MCF-7	breast:
4	chr6:146187828..146190491-chr6:146197995..146199630,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10447450	1.00[ASN][1000 genomes]
rs10457789	1.00[ASN][1000 genomes]
rs10457790	0.87[ASN][1000 genomes]
rs11232	1.00[ASN][1000 genomes]
rs12189548	1.00[ASN][1000 genomes]
rs12193627	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12195987	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12196298	0.87[ASN][1000 genomes]
rs12198683	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12200607	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12205454	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12212636	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214668	1.00[ASN][1000 genomes]
rs12214705	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12216492	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13201738	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13209322	1.00[ASN][1000 genomes]
rs13210966	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17225973	1.00[ASN][1000 genomes]
rs28703599	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35587488	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs35667536	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35765437	0.86[AFR][1000 genomes]
rs35807318	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3811105	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3923580	1.00[ASN][1000 genomes]
rs714680	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146182400-146196600	Weak transcription	Fetal Heart	heart
4	chr6:146184200-146189600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:146185200-146212200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:146186000-146189200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:146186000-146189600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:146186400-146189200	Enhancers	Thymus	Thymus
9	chr6:146186400-146189400	Enhancers	Fetal Thymus	thymus
10	chr6:146186400-146213200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:146186600-146189000	Enhancers	Primary T cells from cord blood	blood
12	chr6:146186800-146189000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:146186800-146189400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:146186800-146199400	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:146188000-146189400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:146188000-146189800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:146188000-146196400	Weak transcription	Left Ventricle	heart
18	chr6:146188000-146196600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:146188000-146201400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:146188000-146218800	Weak transcription	Right Ventricle	heart
21	chr6:146188200-146189400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:146188400-146192000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:146188400-146201200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:146188600-146189200	Enhancers	Primary B cells from cord blood	blood
25	chr6:146188600-146189400	Enhancers	Dnd41	blood
26	chr6:146188600-146189400	Enhancers	GM12878-XiMat	blood
27	chr6:146188600-146193200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:146188600-146196400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:146188800-146209000	Weak transcription	Primary T cells fromperipheralblood	blood

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