Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12193627	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12195117	0.93[EUR][1000 genomes]
rs12195987	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12198683	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12200607	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205454	0.87[EUR][1000 genomes]
rs12212636	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12214705	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196875	0.85[EUR][1000 genomes]
rs13200495	0.89[EUR][1000 genomes]
rs13201738	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13203662	0.85[EUR][1000 genomes]
rs28703599	0.87[EUR][1000 genomes]
rs34211445	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35587488	0.87[EUR][1000 genomes]
rs35667536	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35807318	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899772	0.85[EUR][1000 genomes]
rs73579446	0.89[EUR][1000 genomes]
rs9485004	0.84[EUR][1000 genomes]
rs952407	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146096200-146105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:146099800-146106000	Weak transcription	Pancreas	Pancrea
3	chr6:146100000-146106000	Weak transcription	Fetal Muscle Trunk	muscle

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