Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146128264..146131082-chr6:146176752..146178262,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM1-4	chr6:146177766-146178260	l_3287_chr6:146177765-146191210_heart

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10447450	1.00[ASN][1000 genomes]
rs10457789	1.00[ASN][1000 genomes]
rs10457790	0.87[ASN][1000 genomes]
rs11232	1.00[ASN][1000 genomes]
rs12189548	1.00[ASN][1000 genomes]
rs12193627	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12195117	0.85[EUR][1000 genomes]
rs12195987	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12196298	0.87[ASN][1000 genomes]
rs12198683	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12200607	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12205454	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12214668	1.00[ASN][1000 genomes]
rs12214705	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12216492	0.87[ASN][1000 genomes]
rs13200495	0.82[EUR][1000 genomes]
rs13201738	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13209322	1.00[ASN][1000 genomes]
rs13210966	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17225973	1.00[ASN][1000 genomes]
rs28703599	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34211445	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35587488	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35667536	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35807318	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3811105	0.87[ASN][1000 genomes]
rs3923580	1.00[ASN][1000 genomes]
rs714680	0.87[ASN][1000 genomes]
rs73579446	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830835	chr6:146145148-146287473	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146172200-146202400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:146172400-146181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:146172600-146181200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:146177600-146204200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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