Variant report

Variant	rs1219678
Chromosome Location	chr8:52253248-52253249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1003095	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091279	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10092020	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10101803	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1017351	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1017352	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1017353	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1017354	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10958261	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11776636	0.87[EUR][1000 genomes]
rs11778440	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11778598	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11993179	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1219677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1219680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1236097	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12543420	0.88[EUR][1000 genomes]
rs12549831	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12550267	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1346954	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1367817	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1370443	0.87[EUR][1000 genomes]
rs1370444	0.86[EUR][1000 genomes]
rs1431619	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1431620	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1431621	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1431622	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1431623	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1431624	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1431625	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1431626	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1431627	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1431628	0.85[EUR][1000 genomes]
rs1473240	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1560508	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1560509	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1560510	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583197	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16916011	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17261657	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991691	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1991692	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1991693	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28522270	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28805429	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915454	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915456	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915457	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915458	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2915459	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915460	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915461	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915462	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2915465	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915467	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915468	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915469	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915470	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915471	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915472	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915473	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915475	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915476	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915477	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915478	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915480	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915481	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915482	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915483	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915484	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915486	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2915487	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2915488	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2976983	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2976984	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2976985	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2976986	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976987	0.81[EUR][1000 genomes]
rs2976988	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976989	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976990	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976991	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976992	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976993	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2976994	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3097703	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3097704	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3097705	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3097706	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3115784	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35426341	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4471026	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4873190	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4873545	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57224283	0.87[EUR][1000 genomes]
rs60579236	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60646659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67110071	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67134977	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67152383	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6981422	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6996951	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7000176	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7003720	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7016775	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs726127	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs766788	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs766789	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs766790	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7840437	0.87[EUR][1000 genomes]
rs7844531	0.80[EUR][1000 genomes]
rs7846115	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9298444	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs969257	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs972025	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs972026	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52245000-52258600	Weak transcription	Left Ventricle	heart

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