Variant report

Variant	rs7840437
Chromosome Location	chr8:52168624-52168625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr8:52168511-52168711	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000253664	TF binding region

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1003095	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10091279	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs10092020	0.89[EUR][1000 genomes]
rs10094879	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10097749	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10101803	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs10102454	0.90[ASN][1000 genomes]
rs10107148	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10110193	0.82[ASN][1000 genomes]
rs10113485	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1017352	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1017353	0.95[CEU][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs1017354	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1052704	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs10958261	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11776636	0.83[EUR][1000 genomes]
rs11778440	0.82[EUR][1000 genomes]
rs11778598	0.82[EUR][1000 genomes]
rs11989863	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11991037	0.82[ASN][1000 genomes]
rs11993179	0.91[EUR][1000 genomes]
rs1219677	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs1219678	0.87[EUR][1000 genomes]
rs1219680	0.95[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1236097	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs12542121	0.90[ASN][1000 genomes]
rs12543420	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12549831	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12550267	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1346954	0.95[CEU][hapmap];0.81[TSI][hapmap]
rs1367817	0.85[EUR][1000 genomes]
rs1370443	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370444	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370445	0.84[CEU][hapmap]
rs1370446	1.00[CEU][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs1431619	0.95[CEU][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs1431620	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1431621	0.81[EUR][1000 genomes]
rs1431622	0.81[EUR][1000 genomes]
rs1431623	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs1431624	0.94[CEU][hapmap]
rs1431625	0.95[CEU][hapmap]
rs1431626	0.95[CEU][hapmap]
rs1431627	0.95[CEU][hapmap]
rs1431628	0.95[CEU][hapmap]
rs1560508	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs1560509	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs1560510	0.95[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs16915954	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16915972	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16916011	0.88[EUR][1000 genomes]
rs17261657	0.89[CEU][hapmap]
rs1816630	1.00[CEU][hapmap]
rs1837086	0.82[ASN][1000 genomes]
rs1991691	0.95[CEU][hapmap]
rs1991692	0.95[CEU][hapmap]
rs2217988	0.95[CEU][hapmap];0.81[TSI][hapmap]
rs28417640	0.82[ASN][1000 genomes]
rs28522270	0.87[EUR][1000 genomes]
rs28534083	0.82[ASN][1000 genomes]
rs28805429	0.90[EUR][1000 genomes]
rs2915454	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs2915456	0.86[EUR][1000 genomes]
rs2915457	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2915458	0.81[EUR][1000 genomes]
rs2915460	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2915461	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs2915462	0.86[EUR][1000 genomes]
rs2915465	0.95[CEU][hapmap];0.81[TSI][hapmap]
rs2915467	0.94[CEU][hapmap]
rs2915468	0.95[CEU][hapmap]
rs2915469	0.95[CEU][hapmap]
rs2915471	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915472	0.80[EUR][1000 genomes]
rs2915473	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915475	0.95[CEU][hapmap];0.81[TSI][hapmap]
rs2915476	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915477	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915478	0.80[EUR][1000 genomes]
rs2915479	0.94[CEU][hapmap]
rs2915480	0.95[CEU][hapmap]
rs2915481	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915482	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915483	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915484	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2915485	0.95[CEU][hapmap]
rs2915486	0.80[EUR][1000 genomes]
rs2915489	0.84[CEU][hapmap]
rs2976984	0.95[CEU][hapmap];0.84[TSI][hapmap]
rs2976985	0.95[CEU][hapmap]
rs2976986	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2976988	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2976989	0.95[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs2976990	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2976991	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs2976992	0.94[CEU][hapmap]
rs2976993	0.95[CEU][hapmap]
rs2976994	0.94[CEU][hapmap];0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs3097703	0.95[CEU][hapmap]
rs3097704	0.95[CEU][hapmap]
rs3097705	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs3097706	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs3115784	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs35426341	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4471026	0.92[EUR][1000 genomes]
rs4500070	0.89[CEU][hapmap]
rs4873189	0.80[CEU][hapmap]
rs4873190	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873192	0.82[ASN][1000 genomes]
rs4873530	0.85[CEU][hapmap]
rs4873533	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873534	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873540	0.82[ASN][1000 genomes]
rs4873542	0.82[ASN][1000 genomes]
rs4873544	0.82[ASN][1000 genomes]
rs4873545	0.89[EUR][1000 genomes]
rs57224283	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60579236	0.91[EUR][1000 genomes]
rs60646659	0.89[EUR][1000 genomes]
rs6473595	0.82[ASN][1000 genomes]
rs67110071	0.91[EUR][1000 genomes]
rs67134977	0.89[EUR][1000 genomes]
rs67152383	0.91[EUR][1000 genomes]
rs6981422	0.89[EUR][1000 genomes]
rs6986651	0.84[ASN][1000 genomes]
rs6992933	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6996951	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6998723	0.90[ASN][1000 genomes]
rs6998855	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs6999446	0.82[ASN][1000 genomes]
rs7000176	0.89[EUR][1000 genomes]
rs7003720	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7008365	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7016775	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7017403	1.00[CEU][hapmap]
rs7017421	1.00[CEU][hapmap]
rs726127	0.89[EUR][1000 genomes]
rs766788	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs766789	0.89[EUR][1000 genomes]
rs766790	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7814566	0.82[ASN][1000 genomes]
rs7818710	0.90[ASN][1000 genomes]
rs7821565	0.90[ASN][1000 genomes]
rs7825017	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827306	1.00[CEU][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs7827446	1.00[CEU][hapmap];0.83[CHD][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap];0.82[ASN][1000 genomes]
rs7844531	0.82[ASN][1000 genomes]
rs7844947	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7846115	0.89[EUR][1000 genomes]
rs9298442	0.82[ASN][1000 genomes]
rs9298444	0.95[CEU][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs972025	0.95[CEU][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs972026	0.95[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1031155	chr8:51907530-52173218	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv6189	chr8:52145834-52191132	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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