Variant report

Variant	rs35426341
Chromosome Location	chr8:52181659-52181660
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs1003095	0.90[EUR][1000 genomes]
rs10091279	0.91[EUR][1000 genomes]
rs10092020	0.91[EUR][1000 genomes]
rs10094879	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10097749	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10101803	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10102454	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10107148	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10110193	0.85[ASN][1000 genomes]
rs10113485	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1017351	0.80[EUR][1000 genomes]
rs1017352	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1017353	0.88[EUR][1000 genomes]
rs1017354	0.88[EUR][1000 genomes]
rs10958261	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11776636	0.85[EUR][1000 genomes]
rs11778440	0.83[EUR][1000 genomes]
rs11778598	0.83[EUR][1000 genomes]
rs11989863	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11991037	0.85[ASN][1000 genomes]
rs11993179	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1219677	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1219678	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1219680	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1236097	0.88[EUR][1000 genomes]
rs12542121	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12543420	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12549831	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550267	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1367817	0.87[EUR][1000 genomes]
rs1370443	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370444	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370446	0.85[ASN][1000 genomes]
rs1431619	0.88[EUR][1000 genomes]
rs1431620	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1431621	0.83[EUR][1000 genomes]
rs1431622	0.83[EUR][1000 genomes]
rs1431623	0.83[EUR][1000 genomes]
rs1431624	0.80[EUR][1000 genomes]
rs1431625	0.81[EUR][1000 genomes]
rs1431627	0.81[EUR][1000 genomes]
rs1560508	0.81[EUR][1000 genomes]
rs1560509	0.81[EUR][1000 genomes]
rs1560510	0.81[EUR][1000 genomes]
rs16915954	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16915972	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16916011	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17261657	0.81[EUR][1000 genomes]
rs1837086	0.85[ASN][1000 genomes]
rs1991691	0.81[EUR][1000 genomes]
rs1991692	0.81[EUR][1000 genomes]
rs1991693	0.81[EUR][1000 genomes]
rs28417640	0.85[ASN][1000 genomes]
rs28522270	0.88[EUR][1000 genomes]
rs28534083	0.85[ASN][1000 genomes]
rs28805429	0.92[EUR][1000 genomes]
rs2915454	0.87[EUR][1000 genomes]
rs2915456	0.88[EUR][1000 genomes]
rs2915457	0.88[EUR][1000 genomes]
rs2915458	0.82[EUR][1000 genomes]
rs2915459	0.80[EUR][1000 genomes]
rs2915460	0.88[EUR][1000 genomes]
rs2915461	0.88[EUR][1000 genomes]
rs2915462	0.88[EUR][1000 genomes]
rs2915467	0.81[EUR][1000 genomes]
rs2915468	0.81[EUR][1000 genomes]
rs2915469	0.81[EUR][1000 genomes]
rs2915470	0.81[EUR][1000 genomes]
rs2915471	0.81[EUR][1000 genomes]
rs2915472	0.81[EUR][1000 genomes]
rs2915473	0.81[EUR][1000 genomes]
rs2915476	0.81[EUR][1000 genomes]
rs2915477	0.81[EUR][1000 genomes]
rs2915478	0.81[EUR][1000 genomes]
rs2915480	0.81[EUR][1000 genomes]
rs2915481	0.81[EUR][1000 genomes]
rs2915482	0.81[EUR][1000 genomes]
rs2915483	0.81[EUR][1000 genomes]
rs2915484	0.81[EUR][1000 genomes]
rs2915486	0.81[EUR][1000 genomes]
rs2915487	0.81[EUR][1000 genomes]
rs2915488	0.81[EUR][1000 genomes]
rs2976983	0.80[EUR][1000 genomes]
rs2976986	0.81[EUR][1000 genomes]
rs2976988	0.81[EUR][1000 genomes]
rs2976989	0.81[EUR][1000 genomes]
rs2976990	0.81[EUR][1000 genomes]
rs2976991	0.81[EUR][1000 genomes]
rs2976992	0.81[EUR][1000 genomes]
rs2976993	0.81[EUR][1000 genomes]
rs2976994	0.81[EUR][1000 genomes]
rs3097703	0.80[EUR][1000 genomes]
rs3097705	0.87[EUR][1000 genomes]
rs3097706	0.87[EUR][1000 genomes]
rs3115784	0.81[EUR][1000 genomes]
rs4471026	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4873190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873192	0.85[ASN][1000 genomes]
rs4873533	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873534	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873540	0.85[ASN][1000 genomes]
rs4873542	0.85[ASN][1000 genomes]
rs4873544	0.85[ASN][1000 genomes]
rs4873545	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57224283	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60579236	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60646659	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6473595	0.85[ASN][1000 genomes]
rs67110071	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67134977	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67152383	0.92[EUR][1000 genomes]
rs6981422	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6986651	0.86[ASN][1000 genomes]
rs6992933	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6996951	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6998723	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6999446	0.85[ASN][1000 genomes]
rs7000176	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7003720	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7008365	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016775	0.92[EUR][1000 genomes]
rs726127	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs766788	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs766789	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs766790	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7814566	0.85[ASN][1000 genomes]
rs7818710	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7821565	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7825017	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7827306	0.85[ASN][1000 genomes]
rs7827446	0.85[ASN][1000 genomes]
rs7840437	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7844531	0.85[ASN][1000 genomes]
rs7844947	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7846115	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9298442	0.85[ASN][1000 genomes]
rs9298444	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs972025	0.82[EUR][1000 genomes]
rs972026	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv6189	chr8:52145834-52191132	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52180400-52181800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:52180400-52189400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:52181000-52181800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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