Variant report

Variant	rs10102454
Chromosome Location	chr8:52218259-52218260
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10094879	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10097749	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10105228	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10107148	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10110193	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10113485	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1052704	0.98[EUR][1000 genomes]
rs10958261	0.82[EUR][1000 genomes]
rs11989863	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991037	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11993179	0.82[EUR][1000 genomes]
rs12542121	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543420	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12549831	0.93[ASN][1000 genomes]
rs12550267	0.84[EUR][1000 genomes]
rs1370443	0.90[ASN][1000 genomes]
rs1370444	0.90[ASN][1000 genomes]
rs1370446	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16915954	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16915972	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816630	0.98[EUR][1000 genomes]
rs1837086	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1837087	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2217988	0.96[EUR][1000 genomes]
rs28417640	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28449829	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28534083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28805429	0.82[EUR][1000 genomes]
rs35426341	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4471026	0.84[EUR][1000 genomes]
rs4500070	0.81[EUR][1000 genomes]
rs4873190	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873533	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873534	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873540	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873541	0.80[EUR][1000 genomes]
rs4873542	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4873543	0.98[EUR][1000 genomes]
rs4873544	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57224283	0.90[ASN][1000 genomes]
rs60579236	0.82[EUR][1000 genomes]
rs6473594	0.80[EUR][1000 genomes]
rs6473595	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66555193	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67110071	0.82[EUR][1000 genomes]
rs67152383	0.82[EUR][1000 genomes]
rs6986651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6987616	0.98[EUR][1000 genomes]
rs6987775	0.98[EUR][1000 genomes]
rs6992933	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998723	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998855	0.96[EUR][1000 genomes]
rs6999446	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7003720	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7004460	0.80[EUR][1000 genomes]
rs7008365	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016124	0.96[EUR][1000 genomes]
rs7016775	0.82[EUR][1000 genomes]
rs7017403	0.96[EUR][1000 genomes]
rs7017421	0.96[EUR][1000 genomes]
rs7813377	0.80[EUR][1000 genomes]
rs7814566	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7817771	0.81[EUR][1000 genomes]
rs7818411	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7818590	0.98[EUR][1000 genomes]
rs7818710	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825017	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7827306	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827446	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7828080	0.80[EUR][1000 genomes]
rs7834299	0.80[EUR][1000 genomes]
rs7839630	0.98[EUR][1000 genomes]
rs7840437	0.90[ASN][1000 genomes]
rs7842457	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7844531	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7844947	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845311	0.81[EUR][1000 genomes]
rs9298442	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298443	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3381451	chr8:52216799-52219047	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52215400-52221800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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