Variant report

Variant	rs6473594
Chromosome Location	chr8:52229921-52229922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1003095	0.82[CEU][hapmap]
rs10091279	0.81[CEU][hapmap]
rs10101803	0.81[CEU][hapmap]
rs10102454	0.80[EUR][1000 genomes]
rs10105228	0.81[EUR][1000 genomes]
rs10110193	0.81[EUR][1000 genomes]
rs1052704	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs10958261	0.86[CEU][hapmap]
rs11991037	0.81[EUR][1000 genomes]
rs1219677	0.82[CEU][hapmap]
rs1219679	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1219680	0.85[CEU][hapmap]
rs12542121	0.80[EUR][1000 genomes]
rs12550267	0.85[CEU][hapmap]
rs1346954	0.85[CEU][hapmap]
rs1370445	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370446	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1431619	0.85[CEU][hapmap]
rs1437593	0.85[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1560510	0.85[CEU][hapmap]
rs1816630	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1837086	0.81[EUR][1000 genomes]
rs1837087	0.81[EUR][1000 genomes]
rs2217988	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs28417640	0.81[EUR][1000 genomes]
rs28449829	0.81[EUR][1000 genomes]
rs28534083	0.81[EUR][1000 genomes]
rs2915465	0.85[CEU][hapmap]
rs2915475	0.85[CEU][hapmap]
rs2976984	0.85[CEU][hapmap]
rs2976989	0.85[CEU][hapmap]
rs2976994	0.85[CEU][hapmap]
rs2977006	0.88[YRI][hapmap]
rs3097707	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4500070	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4873189	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873192	0.81[EUR][1000 genomes]
rs4873530	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4873540	0.81[EUR][1000 genomes]
rs4873541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873542	0.81[EUR][1000 genomes]
rs4873543	0.82[EUR][1000 genomes]
rs4873544	0.82[EUR][1000 genomes]
rs6473595	0.81[EUR][1000 genomes]
rs6473596	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66555193	0.81[EUR][1000 genomes]
rs6984536	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6986651	0.81[EUR][1000 genomes]
rs6987616	0.82[EUR][1000 genomes]
rs6987775	0.82[EUR][1000 genomes]
rs6992829	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6995702	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6996951	0.82[CEU][hapmap]
rs6998723	0.80[EUR][1000 genomes]
rs6998855	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs6999446	0.81[EUR][1000 genomes]
rs6999880	0.90[ASN][1000 genomes]
rs7004460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016124	0.81[EUR][1000 genomes]
rs7016775	0.85[CEU][hapmap]
rs7017403	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7017421	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs766788	0.82[CEU][hapmap]
rs766790	0.82[CEU][hapmap]
rs7813377	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7814566	0.82[EUR][1000 genomes]
rs7817771	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7818590	0.82[EUR][1000 genomes]
rs7818710	0.80[EUR][1000 genomes]
rs7821565	0.80[EUR][1000 genomes]
rs7827306	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs7827446	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs7828080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7834299	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839630	0.82[EUR][1000 genomes]
rs7840437	0.90[CEU][hapmap]
rs7842285	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7842457	0.81[EUR][1000 genomes]
rs7844531	0.80[EUR][1000 genomes]
rs7845311	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9298441	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298442	0.81[EUR][1000 genomes]
rs9298443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298444	0.85[CEU][hapmap]
rs9657149	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs972025	0.85[CEU][hapmap]
rs972026	0.85[CEU][hapmap]
rs994127	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52221200-52238000	Weak transcription	Left Ventricle	heart

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