Variant report

Variant	rs6999880
Chromosome Location	chr8:52163650-52163651
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1003095	0.85[CEU][hapmap]
rs10091279	0.84[CEU][hapmap]
rs10101803	0.85[CEU][hapmap]
rs1017352	0.80[CEU][hapmap]
rs1017353	0.80[CEU][hapmap]
rs1017354	0.80[CEU][hapmap]
rs1052704	0.90[CEU][hapmap]
rs10958261	0.90[CEU][hapmap]
rs1219677	0.85[CEU][hapmap]
rs1219680	0.84[CEU][hapmap]
rs1236097	0.80[CEU][hapmap]
rs12550267	0.89[CEU][hapmap]
rs1346954	0.84[CEU][hapmap]
rs1370443	0.81[AMR][1000 genomes]
rs1370444	0.81[AMR][1000 genomes]
rs1370445	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1370446	0.90[CEU][hapmap]
rs1431619	0.84[CEU][hapmap]
rs1431620	0.80[CEU][hapmap]
rs1431624	0.82[CEU][hapmap]
rs1431625	0.80[CEU][hapmap]
rs1431626	0.80[CEU][hapmap]
rs1431627	0.80[CEU][hapmap]
rs1431628	0.80[CEU][hapmap]
rs1437593	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs1560508	0.80[CEU][hapmap]
rs1560509	0.80[CEU][hapmap]
rs1560510	0.84[CEU][hapmap]
rs1816630	0.85[CEU][hapmap]
rs1991691	0.80[CEU][hapmap]
rs1991692	0.80[CEU][hapmap]
rs2217988	0.84[CEU][hapmap]
rs2915454	0.80[CEU][hapmap]
rs2915457	0.80[CEU][hapmap]
rs2915460	0.80[CEU][hapmap]
rs2915461	0.80[CEU][hapmap]
rs2915465	0.84[CEU][hapmap]
rs2915467	0.83[CEU][hapmap]
rs2915468	0.80[CEU][hapmap]
rs2915469	0.80[CEU][hapmap]
rs2915473	0.80[CEU][hapmap]
rs2915475	0.84[CEU][hapmap]
rs2915476	0.80[CEU][hapmap]
rs2915477	0.80[CEU][hapmap]
rs2915480	0.80[CEU][hapmap]
rs2915481	0.80[CEU][hapmap]
rs2915482	0.80[CEU][hapmap]
rs2915483	0.80[CEU][hapmap]
rs2915484	0.80[CEU][hapmap]
rs2915485	0.80[CEU][hapmap]
rs2976984	0.84[CEU][hapmap]
rs2976985	0.80[CEU][hapmap]
rs2976986	0.80[CEU][hapmap]
rs2976988	0.80[CEU][hapmap]
rs2976989	0.84[CEU][hapmap]
rs2976990	0.80[CEU][hapmap]
rs2976991	0.80[CEU][hapmap]
rs2976992	0.83[CEU][hapmap]
rs2976993	0.80[CEU][hapmap]
rs2976994	0.84[CEU][hapmap]
rs3097703	0.80[CEU][hapmap]
rs3097704	0.80[CEU][hapmap]
rs3097705	0.80[CEU][hapmap]
rs3097706	0.80[CEU][hapmap]
rs3115784	0.80[CEU][hapmap]
rs4500070	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs4873189	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873530	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873541	0.90[ASN][1000 genomes]
rs57224283	0.81[AMR][1000 genomes]
rs6473594	0.90[ASN][1000 genomes]
rs6473596	0.89[ASN][1000 genomes]
rs6992829	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6995702	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996951	0.85[CEU][hapmap]
rs6998855	0.90[CEU][hapmap]
rs7004460	0.87[ASN][1000 genomes]
rs7016775	0.89[CEU][hapmap]
rs7017403	0.83[CEU][hapmap]
rs7017421	0.83[CEU][hapmap]
rs766788	0.85[CEU][hapmap]
rs766790	0.85[CEU][hapmap]
rs7817771	0.90[ASN][1000 genomes]
rs7827306	0.90[CEU][hapmap]
rs7827446	0.90[CEU][hapmap]
rs7828080	0.87[ASN][1000 genomes]
rs7834299	0.90[ASN][1000 genomes]
rs7840437	0.90[CEU][hapmap]
rs7842285	0.81[ASN][1000 genomes]
rs7845311	0.88[ASN][1000 genomes]
rs9298441	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298443	0.90[ASN][1000 genomes]
rs9298444	0.84[CEU][hapmap]
rs9657149	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs972025	0.84[CEU][hapmap]
rs972026	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1031155	chr8:51907530-52173218	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv6189	chr8:52145834-52191132	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52163600-52165000	Enhancers	Fetal Brain Male	brain

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