Variant report

Variant	rs4873189
Chromosome Location	chr8:52157888-52157889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:41466381..41468590-chr8:52157758..52159258,2	MCF-7	breast:
2	chr17:41400152..41402660-chr8:52157778..52160758,2	K562	blood:
3	chr17:41398392..41400915-chr8:52157758..52159278,2	K562	blood:

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1052704	0.80[CEU][hapmap]
rs10958261	0.80[CEU][hapmap]
rs12550267	0.83[CEU][hapmap]
rs1370445	0.85[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs1370446	0.80[CEU][hapmap]
rs1437593	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs1816630	0.80[CEU][hapmap]
rs4500070	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs4873530	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873541	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6473594	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6473596	0.89[ASN][1000 genomes]
rs6992829	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6995702	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6998855	0.80[CEU][hapmap]
rs6999880	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7004460	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7016775	0.83[CEU][hapmap]
rs7017403	0.83[CEU][hapmap]
rs7017421	0.83[CEU][hapmap]
rs7817771	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827306	0.80[CEU][hapmap]
rs7827446	0.80[CEU][hapmap]
rs7828080	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7834299	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7840437	0.80[CEU][hapmap]
rs7842285	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7845311	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298441	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9298443	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9657149	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv2764079	chr8:51881783-52202880	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv465679	chr8:51883927-52189796	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv611350	chr8:51883927-52189796	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1030378	chr8:51892949-52191830	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1031155	chr8:51907530-52173218	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv6189	chr8:52145834-52191132	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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