Variant report

Variant	rs7817771
Chromosome Location	chr8:52216731-52216732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1003095	0.85[CEU][hapmap]
rs10091279	0.85[CEU][hapmap]
rs10101803	0.85[CEU][hapmap]
rs10102454	0.81[EUR][1000 genomes]
rs1017352	0.85[CEU][hapmap]
rs1017353	0.85[CEU][hapmap]
rs1017354	0.85[CEU][hapmap]
rs1052704	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs10958261	0.90[CEU][hapmap]
rs1219677	0.85[CEU][hapmap]
rs1219679	0.85[EUR][1000 genomes]
rs1219680	0.85[CEU][hapmap]
rs1236097	0.85[CEU][hapmap]
rs12542121	0.81[EUR][1000 genomes]
rs12550267	0.89[CEU][hapmap]
rs1346954	0.85[CEU][hapmap]
rs1370445	0.83[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1370446	0.90[CEU][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes]
rs1431619	0.85[CEU][hapmap]
rs1431620	0.85[CEU][hapmap]
rs1431623	0.83[CEU][hapmap]
rs1431624	0.82[CEU][hapmap]
rs1431625	0.85[CEU][hapmap]
rs1431626	0.85[CEU][hapmap]
rs1431627	0.85[CEU][hapmap]
rs1431628	0.85[CEU][hapmap]
rs1437593	0.85[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs1560508	0.85[CEU][hapmap]
rs1560509	0.85[CEU][hapmap]
rs1560510	0.85[CEU][hapmap]
rs17261657	0.80[CEU][hapmap]
rs1816630	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs1991691	0.85[CEU][hapmap]
rs1991692	0.85[CEU][hapmap]
rs2217988	0.85[CEU][hapmap]
rs2915454	0.85[CEU][hapmap]
rs2915457	0.85[CEU][hapmap]
rs2915460	0.85[CEU][hapmap]
rs2915461	0.85[CEU][hapmap]
rs2915465	0.85[CEU][hapmap]
rs2915467	0.89[CEU][hapmap]
rs2915468	0.85[CEU][hapmap]
rs2915469	0.85[CEU][hapmap]
rs2915471	0.83[CEU][hapmap]
rs2915473	0.85[CEU][hapmap]
rs2915475	0.85[CEU][hapmap]
rs2915476	0.85[CEU][hapmap]
rs2915477	0.85[CEU][hapmap]
rs2915479	0.84[CEU][hapmap]
rs2915480	0.85[CEU][hapmap]
rs2915481	0.85[CEU][hapmap]
rs2915482	0.85[CEU][hapmap]
rs2915483	0.85[CEU][hapmap]
rs2915484	0.85[CEU][hapmap]
rs2915485	0.85[CEU][hapmap]
rs2976984	0.85[CEU][hapmap]
rs2976985	0.85[CEU][hapmap]
rs2976986	0.85[CEU][hapmap]
rs2976988	0.85[CEU][hapmap]
rs2976989	0.85[CEU][hapmap]
rs2976990	0.85[CEU][hapmap]
rs2976991	0.85[CEU][hapmap]
rs2976992	0.89[CEU][hapmap]
rs2976993	0.85[CEU][hapmap]
rs2976994	0.85[CEU][hapmap]
rs2977006	0.88[YRI][hapmap]
rs2977013	0.83[ASW][hapmap]
rs2977016	0.83[ASW][hapmap]
rs3097703	0.85[CEU][hapmap]
rs3097704	0.85[CEU][hapmap]
rs3097705	0.85[CEU][hapmap]
rs3097706	0.85[CEU][hapmap]
rs3097707	0.82[EUR][1000 genomes]
rs3115784	0.85[CEU][hapmap]
rs4500070	1.00[CEU][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4873189	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4873530	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4873541	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873543	0.81[EUR][1000 genomes]
rs4873544	0.81[EUR][1000 genomes]
rs6473594	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6473596	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6984536	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6987616	0.81[EUR][1000 genomes]
rs6987775	0.81[EUR][1000 genomes]
rs6992829	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995702	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6996951	0.85[CEU][hapmap]
rs6998723	0.81[EUR][1000 genomes]
rs6998855	0.90[CEU][hapmap]
rs6999880	0.90[ASN][1000 genomes]
rs7004460	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016775	0.89[CEU][hapmap]
rs7017403	0.89[CEU][hapmap]
rs7017421	0.89[CEU][hapmap]
rs766788	0.85[CEU][hapmap]
rs766790	0.85[CEU][hapmap]
rs7813377	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7814566	0.81[EUR][1000 genomes]
rs7818590	0.81[EUR][1000 genomes]
rs7818710	0.81[EUR][1000 genomes]
rs7821565	0.81[EUR][1000 genomes]
rs7827306	0.90[CEU][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes]
rs7827446	0.90[CEU][hapmap];0.89[MEX][hapmap];0.81[EUR][1000 genomes]
rs7828080	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7834299	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7839630	0.81[EUR][1000 genomes]
rs7840437	0.90[CEU][hapmap]
rs7842285	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845311	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9298441	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298443	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9298444	0.85[CEU][hapmap]
rs9657149	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs972025	0.85[CEU][hapmap]
rs972026	0.85[CEU][hapmap]
rs994127	0.83[ASW][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52215400-52221800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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