Variant report

Variant	rs1437593
Chromosome Location	chr8:52252405-52252406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1003095	0.81[CEU][hapmap]
rs10091279	0.80[CEU][hapmap]
rs10101803	0.81[CEU][hapmap]
rs1017352	0.81[CEU][hapmap]
rs1017353	0.81[CEU][hapmap]
rs1017354	0.81[CEU][hapmap]
rs1052704	0.89[MEX][hapmap]
rs1219677	0.81[CEU][hapmap]
rs1219679	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1219680	0.81[CEU][hapmap]
rs1236097	0.81[CEU][hapmap]
rs1346954	0.81[CEU][hapmap]
rs1370445	0.92[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1431619	0.81[CEU][hapmap]
rs1431620	0.81[CEU][hapmap]
rs1431625	0.81[CEU][hapmap]
rs1431626	0.81[CEU][hapmap]
rs1431627	0.81[CEU][hapmap]
rs1431628	0.81[CEU][hapmap]
rs1560508	0.81[CEU][hapmap]
rs1560509	0.81[CEU][hapmap]
rs1560510	0.81[CEU][hapmap]
rs16916015	0.88[CHB][hapmap]
rs16916032	0.84[CHB][hapmap]
rs1991691	0.81[CEU][hapmap]
rs1991692	0.81[CEU][hapmap]
rs2217988	0.89[MEX][hapmap]
rs28411163	0.86[ASN][1000 genomes]
rs2915454	0.81[CEU][hapmap]
rs2915457	0.81[CEU][hapmap]
rs2915460	0.81[CEU][hapmap]
rs2915461	0.81[CEU][hapmap]
rs2915465	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs2915467	0.84[CEU][hapmap]
rs2915468	0.81[CEU][hapmap]
rs2915469	0.81[CEU][hapmap]
rs2915473	0.81[CEU][hapmap]
rs2915475	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs2915476	0.81[CEU][hapmap]
rs2915477	0.81[CEU][hapmap]
rs2915480	0.81[CEU][hapmap]
rs2915481	0.81[CEU][hapmap]
rs2915482	0.81[CEU][hapmap]
rs2915483	0.81[CEU][hapmap]
rs2915484	0.81[CEU][hapmap]
rs2915485	0.81[CEU][hapmap]
rs2915501	0.82[ASN][1000 genomes]
rs2976984	0.81[CEU][hapmap]
rs2976985	0.81[CEU][hapmap]
rs2976986	0.81[CEU][hapmap]
rs2976988	0.81[CEU][hapmap]
rs2976989	0.81[CEU][hapmap]
rs2976990	0.81[CEU][hapmap]
rs2976991	0.81[CEU][hapmap]
rs2976992	0.84[CEU][hapmap]
rs2976993	0.81[CEU][hapmap]
rs2976994	0.80[CEU][hapmap]
rs2977006	0.84[ASW][hapmap];0.89[YRI][hapmap]
rs2977013	0.92[ASW][hapmap];0.92[LWK][hapmap]
rs2977016	0.92[ASW][hapmap];0.92[LWK][hapmap]
rs3097699	0.81[ASN][1000 genomes]
rs3097703	0.81[CEU][hapmap]
rs3097704	0.81[CEU][hapmap]
rs3097705	0.81[CEU][hapmap]
rs3097706	0.81[CEU][hapmap]
rs3097707	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3115784	0.81[CEU][hapmap]
rs4500070	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873189	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs4873530	0.81[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs4873541	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6473594	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6473596	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6984536	0.97[ASN][1000 genomes]
rs6996951	0.81[CEU][hapmap]
rs6998855	0.89[MEX][hapmap]
rs7004460	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs766788	0.81[CEU][hapmap]
rs766790	0.81[CEU][hapmap]
rs7813377	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7817771	0.85[EUR][1000 genomes]
rs7828080	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7834299	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7845311	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9298443	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9298444	0.81[CEU][hapmap]
rs972025	0.81[CEU][hapmap]
rs972026	0.81[CEU][hapmap]
rs994127	0.92[ASW][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52245000-52258600	Weak transcription	Left Ventricle	heart

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