Variant report

Variant	rs7016124
Chromosome Location	chr8:52236558-52236559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs1003095	0.81[EUR][1000 genomes]
rs10091279	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs10092020	0.81[EUR][1000 genomes]
rs10094879	0.94[EUR][1000 genomes]
rs10097749	0.94[EUR][1000 genomes]
rs10101803	0.81[EUR][1000 genomes]
rs10102454	0.96[EUR][1000 genomes]
rs10105228	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107148	0.94[EUR][1000 genomes]
rs10110193	0.98[EUR][1000 genomes]
rs10113485	0.94[EUR][1000 genomes]
rs1017352	0.88[JPT][hapmap]
rs1017353	0.88[JPT][hapmap]
rs1017354	0.88[JPT][hapmap]
rs1052704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10958261	0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs11989863	0.94[EUR][1000 genomes]
rs11991037	0.98[EUR][1000 genomes]
rs11993179	0.83[EUR][1000 genomes]
rs1219677	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs1219680	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1236097	0.88[JPT][hapmap]
rs12542121	0.96[EUR][1000 genomes]
rs12550267	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs1346954	0.86[JPT][hapmap]
rs1370446	0.88[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1431619	0.86[JPT][hapmap]
rs1431620	0.88[JPT][hapmap]
rs1431624	0.86[JPT][hapmap]
rs1431625	0.88[JPT][hapmap]
rs1431626	0.88[JPT][hapmap]
rs1431627	0.88[JPT][hapmap]
rs1431628	0.88[JPT][hapmap]
rs1560508	0.88[JPT][hapmap]
rs1560509	0.88[JPT][hapmap]
rs1560510	0.86[JPT][hapmap]
rs16915954	0.94[EUR][1000 genomes]
rs16915972	0.94[EUR][1000 genomes]
rs16916011	0.80[EUR][1000 genomes]
rs17261657	0.88[JPT][hapmap]
rs1816630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1837086	0.98[EUR][1000 genomes]
rs1837087	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991691	0.88[JPT][hapmap]
rs1991692	0.88[JPT][hapmap]
rs2217988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417640	0.98[EUR][1000 genomes]
rs28449829	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522270	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28534083	0.98[EUR][1000 genomes]
rs28805429	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2915454	0.88[JPT][hapmap]
rs2915457	0.88[JPT][hapmap]
rs2915460	0.88[JPT][hapmap]
rs2915461	0.88[JPT][hapmap]
rs2915465	0.86[JPT][hapmap]
rs2915467	0.86[JPT][hapmap]
rs2915468	0.88[JPT][hapmap]
rs2915469	0.88[JPT][hapmap]
rs2915471	0.88[JPT][hapmap]
rs2915473	0.88[JPT][hapmap]
rs2915475	0.86[JPT][hapmap]
rs2915476	0.88[JPT][hapmap]
rs2915477	0.88[JPT][hapmap]
rs2915479	0.86[JPT][hapmap]
rs2915480	0.88[JPT][hapmap]
rs2915481	0.88[JPT][hapmap]
rs2915482	0.88[JPT][hapmap]
rs2915483	0.88[JPT][hapmap]
rs2915485	0.88[JPT][hapmap]
rs2976984	0.86[JPT][hapmap]
rs2976985	0.88[JPT][hapmap]
rs2976986	0.88[JPT][hapmap]
rs2976988	0.88[JPT][hapmap]
rs2976989	0.86[JPT][hapmap]
rs2976990	0.88[JPT][hapmap]
rs2976992	0.88[JPT][hapmap]
rs2976993	0.88[JPT][hapmap]
rs2976994	0.86[JPT][hapmap]
rs3097703	0.88[JPT][hapmap]
rs3097704	0.88[JPT][hapmap]
rs3097705	0.88[JPT][hapmap]
rs3097706	0.88[JPT][hapmap]
rs3115784	0.88[JPT][hapmap]
rs4471026	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4500070	0.82[EUR][1000 genomes]
rs4873192	0.98[EUR][1000 genomes]
rs4873533	0.93[EUR][1000 genomes]
rs4873534	0.94[EUR][1000 genomes]
rs4873540	0.98[EUR][1000 genomes]
rs4873541	0.81[EUR][1000 genomes]
rs4873542	0.98[EUR][1000 genomes]
rs4873543	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873544	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4873545	0.81[EUR][1000 genomes]
rs60579236	0.83[EUR][1000 genomes]
rs60646659	0.81[EUR][1000 genomes]
rs6473594	0.81[EUR][1000 genomes]
rs6473595	0.98[EUR][1000 genomes]
rs66555193	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67110071	0.83[EUR][1000 genomes]
rs67134977	0.81[EUR][1000 genomes]
rs67152383	0.83[EUR][1000 genomes]
rs6981422	0.81[EUR][1000 genomes]
rs6986651	0.98[EUR][1000 genomes]
rs6987616	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987775	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992933	0.93[EUR][1000 genomes]
rs6996951	0.81[EUR][1000 genomes]
rs6998723	0.96[EUR][1000 genomes]
rs6998855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999446	0.98[EUR][1000 genomes]
rs7000176	0.81[EUR][1000 genomes]
rs7003720	0.83[EUR][1000 genomes]
rs7004460	0.81[EUR][1000 genomes]
rs7008365	0.93[EUR][1000 genomes]
rs7016775	0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7017403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726127	0.81[EUR][1000 genomes]
rs766788	0.81[EUR][1000 genomes]
rs766789	0.81[EUR][1000 genomes]
rs766790	0.81[EUR][1000 genomes]
rs7813377	0.82[EUR][1000 genomes]
rs7814566	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7818411	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7818590	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818710	0.96[EUR][1000 genomes]
rs7821565	0.96[EUR][1000 genomes]
rs7825017	0.94[EUR][1000 genomes]
rs7827306	0.88[JPT][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7827446	0.88[JPT][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7828080	0.81[EUR][1000 genomes]
rs7834299	0.81[EUR][1000 genomes]
rs7839630	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842457	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844531	0.96[EUR][1000 genomes]
rs7844947	0.93[EUR][1000 genomes]
rs7845311	0.82[EUR][1000 genomes]
rs7846115	0.81[EUR][1000 genomes]
rs9298442	0.98[EUR][1000 genomes]
rs9298443	0.81[EUR][1000 genomes]
rs9298444	0.81[EUR][1000 genomes]
rs972025	0.86[JPT][hapmap]
rs972026	0.86[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52221200-52238000	Weak transcription	Left Ventricle	heart

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