Variant report
| Variant | rs12197385 |
|---|---|
| Chromosome Location | chr6:79815976-79815977 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:79813577..79816233-chr6:79868594..79870801,2 | K562 | blood: | |
| 2 | chr6:79815142..79817932-chr6:79824976..79828157,3 | MCF-7 | breast: | |
| 3 | chr6:79800437..79802708-chr6:79814576..79817076,2 | K562 | blood: | |
| 4 | chr6:79810727..79813086-chr6:79815036..79816743,2 | K562 | blood: | |
| 5 | chr6:79791759..79793416-chr6:79815239..79817078,2 | MCF-7 | breast: | |
| 6 | chr6:79787163..79789192-chr6:79814639..79816438,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000146247 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs10455120 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs12664690 | 0.84[ASN][1000 genomes] |
| rs2236543 | 1.00[LWK][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830705 | chr6:79659297-79829530 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv518477 | chr6:79700159-79850427 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
